Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RYX39_RS01990 Genome accession   NZ_CP136430
Coordinates   375257..375655 (-) Length   132 a.a.
NCBI ID   WP_255004793.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 370257..380655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS01965 (RYX39_01965) - 370814..371950 (+) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -
  RYX39_RS01970 (RYX39_01970) - 371993..372418 (+) 426 WP_198098571.1 RDD family protein -
  RYX39_RS01975 (RYX39_01975) - 372500..372835 (+) 336 WP_101863959.1 YckD family protein -
  RYX39_RS01980 (RYX39_01980) - 372987..373715 (+) 729 WP_106021062.1 AAA family ATPase -
  RYX39_RS01985 (RYX39_01985) - 373788..375221 (+) 1434 WP_255004795.1 glycoside hydrolase family 1 protein -
  RYX39_RS01990 (RYX39_01990) nin/comJ 375257..375655 (-) 399 WP_255004793.1 competence protein ComJ Regulator
  RYX39_RS01995 (RYX39_01995) nucA/comI 375682..376119 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  RYX39_RS02000 (RYX39_02000) tlpC 376317..378029 (-) 1713 WP_095714427.1 methyl-accepting chemotaxis protein TlpC -
  RYX39_RS02005 (RYX39_02005) hxlB 378142..378699 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  RYX39_RS02010 (RYX39_02010) hxlA 378705..379337 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  RYX39_RS02015 (RYX39_02015) hxlR 379569..379931 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14930.80 Da        Isoelectric Point: 4.5022

>NTDB_id=890998 RYX39_RS01990 WP_255004793.1 375257..375655(-) (nin/comJ) [Bacillus halotolerans strain Q2H2]
MIKSWKPQELTVSYHQFTVFQKGSAPPVIDWTDEAIEKGYAEADEAISFEAQRNSKVYILLRLNSSETVASYEKKVTVPF
HVTNDGIEVESIMSKRLSFDLPKGDYQFTCYTVPAELSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=890998 RYX39_RS01990 WP_255004793.1 375257..375655(-) (nin/comJ) [Bacillus halotolerans strain Q2H2]
TTGATCAAATCATGGAAGCCGCAAGAACTGACGGTTTCATATCATCAATTTACTGTATTTCAAAAGGGTTCCGCACCGCC
AGTCATCGATTGGACAGATGAAGCAATTGAAAAAGGATATGCGGAAGCGGACGAAGCCATTTCGTTTGAGGCACAGCGAA
ATTCAAAGGTATATATTCTTTTGCGCCTTAACAGTTCAGAAACAGTAGCATCCTATGAAAAAAAAGTGACTGTTCCTTTT
CACGTCACAAATGACGGAATTGAAGTTGAAAGCATCATGTCCAAACGGCTCTCCTTTGACCTTCCTAAAGGGGACTATCA
ATTTACATGCTACACTGTACCGGCTGAGCTGTCAGATCTGCATGCTGACACTTACATCATTGATGCTGTTTCAGTCTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

85.606

100

0.856