Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU38_RS00625 Genome accession   NZ_AP024885
Coordinates   129003..129608 (+) Length   201 a.a.
NCBI ID   WP_261823400.1    Uniprot ID   -
Organism   Vibrio neonatus strain JCM 21521     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124003..134608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU38_RS00600 gspM 124983..125483 (+) 501 WP_023402374.1 type II secretion system protein GspM -
  OCU38_RS00605 - 125483..126256 (+) 774 WP_261823397.1 type II secretion system protein N -
  OCU38_RS00610 nudE 126374..126931 (+) 558 WP_261823398.1 ADP compounds hydrolase NudE -
  OCU38_RS00615 cysQ 126937..127755 (+) 819 WP_023402377.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU38_RS00620 bioH 127761..128525 (-) 765 WP_261823399.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU38_RS00625 comF 129003..129608 (+) 606 WP_261823400.1 ComF family protein Machinery gene
  OCU38_RS00630 nfuA 129724..130353 (+) 630 WP_023402380.1 Fe-S biogenesis protein NfuA -
  OCU38_RS00635 envZ 130452..131867 (-) 1416 WP_261823401.1 two-component system sensor histidine kinase EnvZ -
  OCU38_RS00640 ompR 131884..132603 (-) 720 WP_023402382.1 two-component system response regulator OmpR -
  OCU38_RS00645 greB 132822..133322 (-) 501 WP_261823402.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23004.26 Da        Isoelectric Point: 9.8257

>NTDB_id=89097 OCU38_RS00625 WP_261823400.1 129003..129608(+) (comF) [Vibrio neonatus strain JCM 21521]
MARCQMCGVNTATPMERCGQCITDPPPWDKLICVGEYQAPLSGFIQKLKYRRQVWHAKELAALLAKQIESPAPILLSIPL
HWRRHLWRGFNQSDYLAESLYQCLTERTQVPICFLPKAITRSKMTKNQMGLNRRQRLINLKKAFLLSPKYLAKLQDQPHV
ALLDDVVTTGSTVAEICVLLKEKGVQRIDIYCICRASRPIL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=89097 OCU38_RS00625 WP_261823400.1 129003..129608(+) (comF) [Vibrio neonatus strain JCM 21521]
GTGGCTCGTTGTCAGATGTGCGGGGTGAATACGGCAACGCCAATGGAGCGGTGTGGACAATGCATTACCGACCCTCCACC
TTGGGATAAGCTGATTTGTGTAGGGGAGTATCAAGCTCCGCTGTCTGGATTTATTCAGAAACTAAAGTATCGTCGACAAG
TGTGGCACGCCAAAGAGTTAGCCGCGTTACTGGCAAAGCAAATCGAGTCACCCGCTCCTATATTACTCTCAATCCCATTG
CACTGGCGCAGACATTTATGGCGCGGATTTAACCAAAGTGACTATCTTGCGGAGTCTTTATATCAGTGCCTTACAGAGCG
TACTCAAGTGCCAATTTGCTTCTTACCTAAAGCTATTACGCGCAGTAAAATGACGAAAAATCAGATGGGATTAAATCGTC
GACAACGTCTGATTAATCTAAAAAAAGCATTTTTGTTATCACCTAAGTATCTAGCTAAATTGCAAGACCAACCTCATGTT
GCTTTATTGGATGACGTAGTCACTACGGGCAGTACCGTGGCCGAAATCTGTGTGCTGCTTAAAGAGAAAGGCGTACAACG
GATTGATATTTATTGCATTTGTAGGGCATCTCGACCTATTTTATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(158-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

51.269

98.01

0.502
  comF Vibrio campbellii strain DS40M4

42.857

100

0.433
  comF Haemophilus influenzae Rd KW20

36.275

100

0.368
  comF Haemophilus influenzae 86-028NP

35.784

100

0.363

Multiple sequence alignment