Detailed information NTG0890936

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: WLF14_RS19700
• Genome accession: NZ_CP151816
• Coordinates: 4358150..4359433 (-)
• Length: 427 a.a.
• NCBI ID: WP_010564906.1
• Uniprot ID: A0ACA7P9P3
• Organism: Pseudomonas fluorescens strain IMGN2
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4353150..4364433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WLF14_RS19690 (WLF14_19690)	-	4355157..4355429 (-)	273	WP_003174819.1	HU family DNA-binding protein	-
WLF14_RS19695 (WLF14_19695)	lon	4355578..4357974 (-)	2397	WP_024076271.1	endopeptidase La	-
WLF14_RS19700 (WLF14_19700)	clpX	4358150..4359433 (-)	1284	WP_010564906.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
WLF14_RS19705 (WLF14_19705)	clpP	4359546..4360181 (-)	636	WP_024076272.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
WLF14_RS19710 (WLF14_19710)	tig	4360273..4361583 (-)	1311	WP_024076273.1	trigger factor	-
WLF14_RS19735 (WLF14_19735)	folD	4362741..4363595 (+)	855	WP_024076274.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46909.52 Da
• Isoelectric Point: 4.8459

>NTDB_id=890936 WLF14_RS19700 WP_010564906.1 4358150..4359433(-) (clpX) [Pseudomonas fluorescens strain IMGN2]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPAAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=890936 WLF14_RS19700 WP_010564906.1 4358150..4359433(-) (clpX) [Pseudomonas fluorescens strain IMGN2]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTACG
CAAATTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGTGAGGAGGTGC
AGGAAGCCCAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGACCAGTATGTGATT
GGTCAAGAGCGTGCAAAGAAGGTTCTGGCCGTAGCGGTGTACAACCACTACAAGCGCTTGAACCAGCGTGACAAGAAAGG
CGACGAAGTCGAACTCGGCAAGAGCAACATCTTGCTGATTGGACCTACAGGCTCGGGTAAAACCCTGCTTGCAGAAACCC
TCGCTCGCCTGCTGAACGTTCCGTTCACCATCGCCGACGCCACCACCCTCACCGAGGCTGGCTACGTGGGTGAAGATGTC
GAGAACATCATTCAGAAACTGCTGCAGAAGTGCGACTACGATGTTGAGAAGGCCCAGATGGGTATTGTCTACATCGACGA
AATCGACAAGATTTCCCGCAAGTCCGACAATCCGTCGATCACACGGGATGTTTCCGGTGAAGGCGTTCAGCAGGCACTGT
TGAAGCTGATTGAAGGCACGGTTGCTTCCGTACCGCCACAAGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTTCAGGTT
GATACGCGTAACATCCTGTTCATCTGTGGCGGTGCGTTCTCCGGTCTGGAAAAGGTTATTCAAAACCGTTCCACCCGTGG
CGGCATTGGTTTCAGTGCAGAGGTACGCAGCAAGGAAGAAGGCAAGAAGGTGGGCGAGTCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTCGTTGGCCGTCTGCCGGTCCTGGCCACGTTGGACGAGTTGGATGAG
GCTGCTCTGATTCAGATCCTCACCGAGCCGAAAAACGCCCTGACCAAGCAATATGCCAAGCTGTTCGAAATGGAAGGTGT
AGACCTCGAGTTCCGTACCGACGCACTCAAATCGGTGGCCAAGCGGGCACTGGAGCGCAAGACCGGTGCGCGTGGCCTGC
GCTCGATTCTCGAAGGCGTGTTGCTTGACACCATGTACGAAATCCCCTCGCAATCCGAGGTGAGTAAAGTGGTGATCGAC
GAAAGCGTTATTGAAGGTAAGTCCAAGCCACTGTATATCTACGAAAACAGTGAGCCTGCTGCCAAGGCTGCGCCAGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.591	95.082	0.576
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.188	94.614	0.532