Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | BLCOC_RS06770 | Genome accession | NZ_CP136422 |
| Coordinates | 1554516..1555211 (-) | Length | 231 a.a. |
| NCBI ID | WP_115624802.1 | Uniprot ID | - |
| Organism | Blautia coccoides strain DSM 935 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1546451..1574073 | 1554516..1555211 | within | 0 |
Gene organization within MGE regions
Location: 1546451..1574073
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLCOC_RS06720 (BLCOC_13510) | - | 1546451..1546867 (+) | 417 | WP_115624793.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| BLCOC_RS06725 (BLCOC_13520) | - | 1546978..1547544 (+) | 567 | WP_115624794.1 | GNAT family N-acetyltransferase | - |
| BLCOC_RS06730 (BLCOC_13530) | - | 1548041..1549012 (+) | 972 | WP_115624795.1 | ABC transporter ATP-binding protein | - |
| BLCOC_RS06735 (BLCOC_13540) | - | 1549016..1549810 (+) | 795 | WP_115624796.1 | ABC transporter permease | - |
| BLCOC_RS06740 (BLCOC_13550) | - | 1549807..1550598 (+) | 792 | WP_115624797.1 | ABC-2 family transporter protein | - |
| BLCOC_RS06745 (BLCOC_13560) | - | 1550628..1550867 (+) | 240 | WP_174717647.1 | hypothetical protein | - |
| BLCOC_RS06750 (BLCOC_13570) | - | 1551083..1551277 (+) | 195 | WP_115624798.1 | hypothetical protein | - |
| BLCOC_RS06755 (BLCOC_13580) | - | 1551364..1551627 (+) | 264 | WP_115624799.1 | helix-turn-helix domain-containing protein | - |
| BLCOC_RS06760 (BLCOC_13590) | - | 1551968..1552999 (+) | 1032 | WP_115624800.1 | YdcF family protein | - |
| BLCOC_RS06765 (BLCOC_13600) | - | 1553146..1554519 (-) | 1374 | WP_115624801.1 | sensor histidine kinase | - |
| BLCOC_RS06770 (BLCOC_13610) | scnR | 1554516..1555211 (-) | 696 | WP_115624802.1 | response regulator transcription factor | Regulator |
| BLCOC_RS06775 (BLCOC_13620) | - | 1555485..1556750 (+) | 1266 | Protein_1327 | IS110 family transposase | - |
| BLCOC_RS06780 (BLCOC_13630) | - | 1557297..1558220 (+) | 924 | WP_115624803.1 | ABC transporter ATP-binding protein | - |
| BLCOC_RS06785 (BLCOC_13640) | - | 1558213..1559016 (+) | 804 | WP_165907212.1 | ABC transporter permease | - |
| BLCOC_RS06790 (BLCOC_13650) | - | 1559021..1559803 (+) | 783 | WP_115624805.1 | ABC transporter permease | - |
| BLCOC_RS06795 (BLCOC_13660) | - | 1559960..1560304 (+) | 345 | WP_115624806.1 | YxeA family protein | - |
| BLCOC_RS06800 (BLCOC_13670) | - | 1560337..1560687 (+) | 351 | WP_115624807.1 | response regulator | - |
| BLCOC_RS06805 (BLCOC_13680) | - | 1561024..1562049 (+) | 1026 | WP_162209476.1 | polyprenyl synthetase family protein | - |
| BLCOC_RS06810 (BLCOC_13690) | - | 1562092..1562688 (+) | 597 | WP_115624809.1 | putative ABC transporter permease | - |
| BLCOC_RS06815 (BLCOC_13700) | - | 1562939..1563928 (+) | 990 | WP_322255268.1 | metallophosphoesterase | - |
| BLCOC_RS06820 (BLCOC_13710) | - | 1564004..1564360 (+) | 357 | WP_162209474.1 | response regulator | - |
| BLCOC_RS06825 (BLCOC_13720) | - | 1564601..1565164 (+) | 564 | WP_115624811.1 | hypothetical protein | - |
| BLCOC_RS06830 (BLCOC_13730) | - | 1565494..1566180 (+) | 687 | WP_115624812.1 | response regulator transcription factor | - |
| BLCOC_RS06835 (BLCOC_13740) | - | 1566189..1567226 (+) | 1038 | WP_115624813.1 | sensor histidine kinase | - |
| BLCOC_RS06840 (BLCOC_13750) | - | 1567305..1567988 (+) | 684 | WP_115624814.1 | ABC transporter ATP-binding protein | - |
| BLCOC_RS06845 (BLCOC_13760) | - | 1567985..1570318 (+) | 2334 | WP_115624815.1 | FtsX-like permease family protein | - |
| BLCOC_RS06850 | - | 1570711..1570944 (+) | 234 | WP_242999045.1 | DUF3784 domain-containing protein | - |
| BLCOC_RS06855 (BLCOC_13780) | - | 1571018..1571830 (+) | 813 | WP_115624816.1 | acyltransferase domain-containing protein | - |
| BLCOC_RS27515 | - | 1572090..1572176 (+) | 87 | WP_334293991.1 | hypothetical protein | - |
| BLCOC_RS06860 (BLCOC_13790) | - | 1572216..1572362 (+) | 147 | WP_242999046.1 | hypothetical protein | - |
| BLCOC_RS06865 (BLCOC_13800) | - | 1572313..1572762 (+) | 450 | WP_242999047.1 | HAD family hydrolase | - |
| BLCOC_RS06870 (BLCOC_13810) | - | 1572799..1573152 (+) | 354 | Protein_1347 | KilA-N domain-containing protein | - |
| BLCOC_RS06875 (BLCOC_13820) | - | 1573522..1574073 (+) | 552 | WP_115624817.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 231 a.a. Molecular weight: 26028.13 Da Isoelectric Point: 5.8270
>NTDB_id=890915 BLCOC_RS06770 WP_115624802.1 1554516..1555211(-) (scnR) [Blautia coccoides strain DSM 935]
MKDKSILAVDDESELLKMLQSVFYRAGYTKITTASSGKEALAIFRENQPDMVILDVMMPGIDGVSLLKEIRKTSTIPVLM
LTARGEADDKFLGFENGADDYLIKPFLPKELLLRVQAILNRAYPEKERIVYLEASTVNLDKAEVYRGDEVFSLTAKEFTL
FEKLFENSGRIVTTGSLCETVCGEFWQGYENTLVTHIRHLREKIEANPSKPVSLLTVKGLGYRLHIKGAEK
MKDKSILAVDDESELLKMLQSVFYRAGYTKITTASSGKEALAIFRENQPDMVILDVMMPGIDGVSLLKEIRKTSTIPVLM
LTARGEADDKFLGFENGADDYLIKPFLPKELLLRVQAILNRAYPEKERIVYLEASTVNLDKAEVYRGDEVFSLTAKEFTL
FEKLFENSGRIVTTGSLCETVCGEFWQGYENTLVTHIRHLREKIEANPSKPVSLLTVKGLGYRLHIKGAEK
Nucleotide
Download Length: 696 bp
>NTDB_id=890915 BLCOC_RS06770 WP_115624802.1 1554516..1555211(-) (scnR) [Blautia coccoides strain DSM 935]
ATGAAAGATAAAAGCATTCTTGCTGTCGACGATGAATCAGAGCTACTTAAAATGCTCCAATCGGTTTTTTACCGTGCCGG
GTACACCAAAATCACCACTGCTTCTTCTGGGAAAGAGGCATTAGCGATATTTCGGGAAAATCAACCCGATATGGTAATTC
TTGATGTGATGATGCCGGGCATTGACGGGGTTTCACTATTAAAGGAAATACGAAAAACGAGTACGATTCCTGTTCTCATG
CTTACAGCCCGCGGAGAAGCCGATGATAAGTTTTTAGGATTTGAAAACGGAGCTGATGATTATCTTATAAAACCTTTTTT
GCCCAAGGAGTTACTTCTGCGTGTTCAGGCAATCTTAAACCGCGCCTATCCTGAAAAGGAACGTATTGTATATCTGGAAG
CTTCAACCGTTAATTTAGATAAGGCCGAAGTTTATCGTGGGGATGAAGTGTTTTCATTGACTGCAAAAGAATTTACGCTA
TTTGAAAAGTTATTTGAAAACTCCGGAAGGATTGTAACCACAGGTTCACTATGCGAAACTGTCTGTGGGGAATTCTGGCA
GGGATATGAAAATACTCTTGTGACACATATACGCCACTTAAGGGAAAAGATCGAGGCCAATCCGTCAAAACCTGTTTCCC
TTTTAACCGTAAAAGGATTAGGTTACCGGCTCCACATTAAGGGGGCGGAAAAATGA
ATGAAAGATAAAAGCATTCTTGCTGTCGACGATGAATCAGAGCTACTTAAAATGCTCCAATCGGTTTTTTACCGTGCCGG
GTACACCAAAATCACCACTGCTTCTTCTGGGAAAGAGGCATTAGCGATATTTCGGGAAAATCAACCCGATATGGTAATTC
TTGATGTGATGATGCCGGGCATTGACGGGGTTTCACTATTAAAGGAAATACGAAAAACGAGTACGATTCCTGTTCTCATG
CTTACAGCCCGCGGAGAAGCCGATGATAAGTTTTTAGGATTTGAAAACGGAGCTGATGATTATCTTATAAAACCTTTTTT
GCCCAAGGAGTTACTTCTGCGTGTTCAGGCAATCTTAAACCGCGCCTATCCTGAAAAGGAACGTATTGTATATCTGGAAG
CTTCAACCGTTAATTTAGATAAGGCCGAAGTTTATCGTGGGGATGAAGTGTTTTCATTGACTGCAAAAGAATTTACGCTA
TTTGAAAAGTTATTTGAAAACTCCGGAAGGATTGTAACCACAGGTTCACTATGCGAAACTGTCTGTGGGGAATTCTGGCA
GGGATATGAAAATACTCTTGTGACACATATACGCCACTTAAGGGAAAAGATCGAGGCCAATCCGTCAAAACCTGTTTCCC
TTTTAACCGTAAAAGGATTAGGTTACCGGCTCCACATTAAGGGGGCGGAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
50.222 |
97.403 |
0.489 |
| vicR | Streptococcus mutans UA159 |
40.87 |
99.567 |
0.407 |
| micA | Streptococcus pneumoniae Cp1015 |
39.912 |
98.701 |
0.394 |