Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   WLF14_RS08540 Genome accession   NZ_CP151816
Coordinates   1856442..1856774 (+) Length   110 a.a.
NCBI ID   WP_069075532.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain IMGN2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851442..1861774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLF14_RS08525 (WLF14_08525) - 1852200..1853168 (+) 969 WP_069075530.1 SDR family oxidoreductase -
  WLF14_RS08530 (WLF14_08530) - 1853206..1854225 (+) 1020 WP_069075531.1 glycosyltransferase family 4 protein -
  WLF14_RS08535 (WLF14_08535) - 1854338..1856332 (+) 1995 WP_069077375.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  WLF14_RS08540 (WLF14_08540) comEA/comE1 1856442..1856774 (+) 333 WP_069075532.1 helix-hairpin-helix domain-containing protein Machinery gene
  WLF14_RS08545 (WLF14_08545) - 1856789..1857367 (-) 579 WP_024074177.1 TetR/AcrR family transcriptional regulator -
  WLF14_RS08550 (WLF14_08550) - 1857502..1858146 (+) 645 WP_102624386.1 GntR family transcriptional regulator -
  WLF14_RS08555 (WLF14_08555) - 1858162..1859010 (+) 849 WP_150055074.1 DUF1989 domain-containing protein -
  WLF14_RS08560 (WLF14_08560) - 1859019..1859186 (-) 168 WP_012722955.1 DUF2897 family protein -
  WLF14_RS08565 (WLF14_08565) eat 1859298..1860662 (-) 1365 WP_024074180.1 ethanolamine permease -
  WLF14_RS08570 (WLF14_08570) kdpF 1861068..1861157 (+) 90 WP_003218754.1 K(+)-transporting ATPase subunit F -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11829.74 Da        Isoelectric Point: 8.5180

>NTDB_id=890915 WLF14_RS08540 WP_069075532.1 1856442..1856774(+) (comEA/comE1) [Pseudomonas fluorescens strain IMGN2]
MQNIYLTSLIFAFLTTLSVTTTAAPSIKPEPPTPMAAQMVQVEQAAKVNLNAADAETLRRDLFGIGAAKAKAIIAYRESN
GPFAAVDELLEVKGIGKALLEKNRERLSIN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=890915 WLF14_RS08540 WP_069075532.1 1856442..1856774(+) (comEA/comE1) [Pseudomonas fluorescens strain IMGN2]
ATGCAAAATATCTACCTTACTTCCCTAATCTTCGCCTTCCTCACCACGCTCTCCGTCACCACCACCGCTGCCCCGTCGAT
CAAACCCGAACCCCCAACCCCCATGGCGGCGCAGATGGTGCAGGTCGAGCAAGCCGCCAAGGTCAACCTGAATGCCGCCG
ACGCCGAAACCCTGCGTCGTGATCTCTTCGGCATCGGTGCCGCCAAGGCCAAGGCGATCATTGCCTACCGCGAAAGCAAC
GGGCCGTTCGCGGCGGTGGATGAGTTACTGGAGGTAAAGGGCATCGGCAAGGCGCTGTTGGAGAAGAACCGCGAGAGGCT
CTCGATCAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

44.954

99.091

0.445
  comE1/comEA Haemophilus influenzae Rd KW20

44.681

85.455

0.382