Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BLCOC_RS06770 Genome accession   NZ_CP136422
Coordinates   1554516..1555211 (-) Length   231 a.a.
NCBI ID   WP_115624802.1    Uniprot ID   -
Organism   Blautia coccoides strain DSM 935     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549516..1560211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLCOC_RS06740 (BLCOC_13550) - 1549807..1550598 (+) 792 WP_115624797.1 ABC-2 family transporter protein -
  BLCOC_RS06745 (BLCOC_13560) - 1550628..1550867 (+) 240 WP_174717647.1 hypothetical protein -
  BLCOC_RS06750 (BLCOC_13570) - 1551083..1551277 (+) 195 WP_115624798.1 hypothetical protein -
  BLCOC_RS06755 (BLCOC_13580) - 1551364..1551627 (+) 264 WP_115624799.1 helix-turn-helix domain-containing protein -
  BLCOC_RS06760 (BLCOC_13590) - 1551968..1552999 (+) 1032 WP_115624800.1 YdcF family protein -
  BLCOC_RS06765 (BLCOC_13600) - 1553146..1554519 (-) 1374 WP_115624801.1 sensor histidine kinase -
  BLCOC_RS06770 (BLCOC_13610) scnR 1554516..1555211 (-) 696 WP_115624802.1 response regulator transcription factor Regulator
  BLCOC_RS06775 (BLCOC_13620) - 1555485..1556750 (+) 1266 Protein_1327 IS110 family transposase -
  BLCOC_RS06780 (BLCOC_13630) - 1557297..1558220 (+) 924 WP_115624803.1 ABC transporter ATP-binding protein -
  BLCOC_RS06785 (BLCOC_13640) - 1558213..1559016 (+) 804 WP_165907212.1 ABC transporter permease -
  BLCOC_RS06790 (BLCOC_13650) - 1559021..1559803 (+) 783 WP_115624805.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26028.13 Da        Isoelectric Point: 5.8270

>NTDB_id=890915 BLCOC_RS06770 WP_115624802.1 1554516..1555211(-) (scnR) [Blautia coccoides strain DSM 935]
MKDKSILAVDDESELLKMLQSVFYRAGYTKITTASSGKEALAIFRENQPDMVILDVMMPGIDGVSLLKEIRKTSTIPVLM
LTARGEADDKFLGFENGADDYLIKPFLPKELLLRVQAILNRAYPEKERIVYLEASTVNLDKAEVYRGDEVFSLTAKEFTL
FEKLFENSGRIVTTGSLCETVCGEFWQGYENTLVTHIRHLREKIEANPSKPVSLLTVKGLGYRLHIKGAEK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=890915 BLCOC_RS06770 WP_115624802.1 1554516..1555211(-) (scnR) [Blautia coccoides strain DSM 935]
ATGAAAGATAAAAGCATTCTTGCTGTCGACGATGAATCAGAGCTACTTAAAATGCTCCAATCGGTTTTTTACCGTGCCGG
GTACACCAAAATCACCACTGCTTCTTCTGGGAAAGAGGCATTAGCGATATTTCGGGAAAATCAACCCGATATGGTAATTC
TTGATGTGATGATGCCGGGCATTGACGGGGTTTCACTATTAAAGGAAATACGAAAAACGAGTACGATTCCTGTTCTCATG
CTTACAGCCCGCGGAGAAGCCGATGATAAGTTTTTAGGATTTGAAAACGGAGCTGATGATTATCTTATAAAACCTTTTTT
GCCCAAGGAGTTACTTCTGCGTGTTCAGGCAATCTTAAACCGCGCCTATCCTGAAAAGGAACGTATTGTATATCTGGAAG
CTTCAACCGTTAATTTAGATAAGGCCGAAGTTTATCGTGGGGATGAAGTGTTTTCATTGACTGCAAAAGAATTTACGCTA
TTTGAAAAGTTATTTGAAAACTCCGGAAGGATTGTAACCACAGGTTCACTATGCGAAACTGTCTGTGGGGAATTCTGGCA
GGGATATGAAAATACTCTTGTGACACATATACGCCACTTAAGGGAAAAGATCGAGGCCAATCCGTCAAAACCTGTTTCCC
TTTTAACCGTAAAAGGATTAGGTTACCGGCTCCACATTAAGGGGGCGGAAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.222

97.403

0.489
  vicR Streptococcus mutans UA159

40.87

99.567

0.407
  micA Streptococcus pneumoniae Cp1015

39.912

98.701

0.394