Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OCU74_RS13230 Genome accession   NZ_AP024883
Coordinates   3000958..3001578 (+) Length   206 a.a.
NCBI ID   WP_087481295.1    Uniprot ID   -
Organism   Vibrio mangrovi strain CECT 7927     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995958..3006578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS13210 - 2997025..2997795 (-) 771 WP_087481299.1 ABC transporter permease -
  OCU74_RS13215 - 2997809..2998783 (-) 975 WP_087481298.1 ABC transporter ATP-binding protein -
  OCU74_RS13220 can 2999226..2999894 (+) 669 WP_087481297.1 carbonate dehydratase -
  OCU74_RS13225 hpt 2999983..3000513 (-) 531 WP_087481296.1 hypoxanthine phosphoribosyltransferase -
  OCU74_RS13230 hapR 3000958..3001578 (+) 621 WP_087481295.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU74_RS13235 lpdA 3001713..3003137 (-) 1425 WP_087481294.1 dihydrolipoyl dehydrogenase -
  OCU74_RS13240 aceF 3003382..3005250 (-) 1869 WP_087481293.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24072.52 Da        Isoelectric Point: 6.4065

>NTDB_id=89084 OCU74_RS13230 WP_087481295.1 3000958..3001578(+) (hapR) [Vibrio mangrovi strain CECT 7927]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVHQFSNFL
ADNIDVDSYIKDNLYHLTHKMTKLVFEDCHWLKVWFEWSASTRDEVWPLFVSTNHTNRLLVKNMFVNAIERGDVSEHYDP
EHLVTLFLGIFYSLFVQVNRLQDPKEIDALVNSYLDMLCIYNNRRA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=89084 OCU74_RS13230 WP_087481295.1 3000958..3001578(+) (hapR) [Vibrio mangrovi strain CECT 7927]
ATGGACGCTTCAATAGAAAAACGCCCTCGTACACGATTATCACCTCAGAAACGTAAACTTCAGCTGATGGAAATTGCACT
TGAAGTTTTTGCAAAACGAGGAATTGGTCGTGGCGGACATGCAGATATCGCAGAAATTGCTCAGGTATCTGTCGCTACTG
TTTTCAATTATTTCCCAACCAGAGAAGATCTTGTAGATGATGTTCTGACTCATGTCGTTCATCAGTTTTCAAACTTCCTG
GCAGATAACATCGATGTAGACAGCTACATCAAAGATAATCTCTATCACCTCACCCATAAAATGACAAAACTGGTCTTTGA
AGATTGTCATTGGTTGAAAGTGTGGTTCGAATGGAGTGCATCAACCCGTGATGAAGTCTGGCCGCTGTTTGTGTCAACCA
ACCATACCAACCGCCTGCTGGTGAAAAATATGTTTGTGAATGCAATCGAACGTGGCGATGTCAGCGAGCATTATGATCCG
GAGCATTTGGTCACTCTGTTCCTCGGAATCTTCTATTCCCTGTTTGTTCAGGTCAACCGCCTGCAGGATCCAAAAGAAAT
CGACGCTTTGGTCAATAGCTATCTGGATATGTTGTGTATTTATAACAACCGCCGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

73.892

98.544

0.728
  hapR Vibrio cholerae strain A1552

73.892

98.544

0.728
  opaR Vibrio parahaemolyticus RIMD 2210633

74.874

96.602

0.723

Multiple sequence alignment