Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Pcarn_RS16565 Genome accession   NZ_AP024882
Coordinates   592332..593513 (-) Length   393 a.a.
NCBI ID   WP_261837032.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 587332..598513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS16545 - 588344..588535 (-) 192 WP_261837028.1 hypothetical protein -
  Pcarn_RS16550 - 588848..589372 (-) 525 WP_261837029.1 porin family protein -
  Pcarn_RS16555 - 589560..589724 (-) 165 WP_261837030.1 hypothetical protein -
  Pcarn_RS16560 - 590263..592293 (+) 2031 WP_261837031.1 hybrid sensor histidine kinase/response regulator -
  Pcarn_RS16565 cqsA 592332..593513 (-) 1182 WP_261837032.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Pcarn_RS16570 astB 593763..595118 (-) 1356 WP_261837033.1 N-succinylarginine dihydrolase -
  Pcarn_RS16575 astA 595150..596190 (-) 1041 WP_261837034.1 arginine N-succinyltransferase -
  Pcarn_RS16580 - 596518..598356 (-) 1839 WP_261837035.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43692.98 Da        Isoelectric Point: 6.1769

>NTDB_id=89062 Pcarn_RS16565 WP_261837032.1 592332..593513(-) (cqsA) [Vibrio ishigakensis strain C1]
MNANTPKKSLPRFIEDRLDFFLQDRIESNLNKKHLVQGKIPTTDAIVLQSNDYLSLSQNIQIQRAHQRAISANDDNVVMS
AIFQQDELVKPEFETELAQFMGMESCLLAQSGWAANIGLLQTICAEGVPVYIDFFAHMSLWEGAKIAGADIHPFMHNNTN
HLRKLIARYGKGIILVDSVYSTIGTLAPLETICDIAQTSECALVVDESHSLGTHGPQGAGLVKQLGLSHQVDFITVSLAK
TFAYRAGAILGSKKISQTLPFVSFPAIFSSAMLPSEIARLDTTLEEIRLAETKRKRLFSHAQTLRKGLKSIGFKVRSQSQ
IVALECGNERNTERVRDFLEDNNIFGSVFCRPATTKNSNIIRFSLCADLDQQDIDDILTVCQLAYDNPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=89062 Pcarn_RS16565 WP_261837032.1 592332..593513(-) (cqsA) [Vibrio ishigakensis strain C1]
ATGAACGCTAATACACCTAAAAAATCACTTCCCCGATTCATCGAAGACCGCTTGGACTTTTTCCTCCAAGATAGGATTGA
GAGTAACTTGAACAAAAAACACCTTGTTCAAGGGAAAATACCGACTACTGATGCCATTGTGTTGCAGAGCAATGACTATT
TGTCTCTGTCTCAAAATATCCAGATTCAAAGAGCCCACCAAAGAGCTATTTCCGCGAATGATGATAACGTCGTTATGTCG
GCCATCTTTCAACAGGATGAATTGGTTAAACCTGAATTTGAAACCGAACTTGCCCAGTTCATGGGGATGGAGAGTTGCCT
ACTGGCTCAATCAGGATGGGCCGCTAACATAGGCTTGCTTCAAACCATCTGTGCAGAGGGGGTTCCCGTTTATATCGACT
TCTTCGCGCATATGTCTCTATGGGAAGGAGCCAAAATAGCCGGTGCCGATATACATCCATTTATGCACAACAATACCAAT
CATCTGCGCAAACTGATCGCTCGCTATGGGAAAGGGATCATATTGGTAGACTCGGTCTACAGCACTATAGGTACGCTTGC
TCCTTTAGAAACTATCTGCGACATAGCACAAACCTCGGAGTGTGCCCTTGTCGTCGATGAATCACATTCGCTGGGTACTC
ATGGACCGCAAGGTGCCGGACTGGTTAAACAGCTTGGGTTGAGTCATCAGGTGGATTTTATTACCGTGAGTCTTGCTAAG
ACTTTTGCATACAGAGCGGGGGCTATCCTTGGCTCAAAGAAAATATCGCAAACTCTGCCTTTCGTCTCTTTTCCCGCAAT
ATTTAGCTCAGCGATGCTTCCCTCCGAGATTGCCAGACTGGATACAACTTTAGAAGAAATACGGCTAGCCGAGACCAAGC
GAAAGCGATTGTTTAGTCATGCTCAAACCCTTAGAAAGGGTTTAAAGAGTATTGGGTTCAAGGTTCGTAGCCAATCACAG
ATCGTCGCGCTCGAATGTGGCAATGAGAGGAATACTGAGCGTGTGCGGGATTTTCTCGAAGATAACAATATATTTGGCTC
TGTTTTTTGCCGACCAGCGACGACCAAAAACAGCAACATCATTCGTTTTTCACTTTGTGCCGACTTGGATCAACAAGACA
TAGACGACATTCTAACTGTGTGTCAGTTAGCCTATGACAACCCTGAGTTGGAGTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.145

98.219

0.532

Multiple sequence alignment