Detailed information NTG0089047

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Pcarn_RS11255
• Genome accession: NZ_AP024881
• Coordinates: 2473146..2474024 (+)
• Length: 292 a.a.
• NCBI ID: WP_261833967.1
• Uniprot ID: -
• Organism: Vibrio ishigakensis strain C1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2468146..2479024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Pcarn_RS11230	ampD	2468347..2468889 (-)	543	WP_261833962.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
Pcarn_RS11235	nadC	2468990..2469877 (+)	888	WP_261833963.1	carboxylating nicotinate-nucleotide diphosphorylase	-
Pcarn_RS11240	-	2470086..2470493 (+)	408	WP_261833964.1	pilin	-
Pcarn_RS11245	-	2470490..2471896 (+)	1407	WP_261833965.1	GspE/PulE family protein	-
Pcarn_RS11250	-	2471886..2473097 (+)	1212	WP_261833966.1	type II secretion system F family protein	-
Pcarn_RS11255	pilD	2473146..2474024 (+)	879	WP_261833967.1	A24 family peptidase	Machinery gene
Pcarn_RS11260	coaE	2474024..2474635 (+)	612	WP_261833968.1	dephospho-CoA kinase	-
Pcarn_RS11265	zapD	2474664..2475404 (+)	741	WP_261833969.1	cell division protein ZapD	-
Pcarn_RS11270	yacG	2475412..2475606 (+)	195	WP_261833970.1	DNA gyrase inhibitor YacG	-
Pcarn_RS11275	rplS	2475812..2476165 (-)	354	WP_261833971.1	50S ribosomal protein L19	-
Pcarn_RS11280	trmD	2476205..2476951 (-)	747	WP_261833972.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Pcarn_RS11285	rimM	2476973..2477503 (-)	531	WP_261833973.1	ribosome maturation factor RimM	-
Pcarn_RS11290	rpsP	2477534..2477782 (-)	249	WP_261833974.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32414.95 Da
• Isoelectric Point: 7.9102

>NTDB_id=89047 Pcarn_RS11255 WP_261833967.1 2473146..2474024(+) (pilD) [Vibrio ishigakensis strain C1]
MLEYYFIQFPALFPIMATILGLIIGSFLNVVIHRLPIIMEREWRTEFAEAYPELKLDKPEGDFGLSLPRSRCPKCETPIK
IRDNIPVLGWLMLRGKCRACSTKISPRYPLIELLSGGLCLIVALQFQPSLYAVALLGFTWVLICATFIDLDTMLLPDSLT
LPLMWAGIALALTGIGPIGLEQAIIGAMAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAALGAWLGWQALPLIILLSSVV
GLVFGIIQLRLKKQGIEKAFPFGPYLAIAGWVYLIVGEQIVSWYLGFYFGGA

Nucleotide

• Length: 879 bp

>NTDB_id=89047 Pcarn_RS11255 WP_261833967.1 2473146..2474024(+) (pilD) [Vibrio ishigakensis strain C1]
ATGCTCGAATATTACTTCATTCAATTCCCTGCCCTCTTCCCAATTATGGCCACAATTCTCGGCCTTATCATCGGCAGTTT
TCTCAATGTAGTTATCCATAGACTGCCCATCATCATGGAAAGAGAATGGAGAACAGAATTTGCTGAGGCCTATCCGGAGC
TAAAACTAGACAAGCCAGAGGGTGACTTTGGACTAAGTTTACCGCGCTCACGCTGCCCTAAGTGTGAAACCCCAATTAAG
ATTCGAGACAATATTCCTGTATTGGGCTGGTTAATGCTTAGAGGTAAATGCCGAGCATGTAGCACTAAGATAAGCCCTCG
CTACCCTTTAATAGAACTTCTCTCTGGCGGTTTGTGCCTCATTGTGGCTCTACAATTCCAACCAAGCTTGTATGCCGTTG
CCCTGCTTGGTTTTACCTGGGTACTGATCTGCGCCACCTTTATCGACCTAGATACCATGCTGTTGCCAGATAGCCTAACT
CTTCCTCTAATGTGGGCTGGCATAGCACTAGCACTAACTGGTATTGGTCCGATAGGCCTTGAACAAGCCATTATCGGTGC
AATGGCGGGTTACCTGTCTCTGTGGAGCGTGTACTGGCTGTTTAAGCTGATTACCGGCAAGGAAGGTATGGGCTATGGCG
ACTTTAAGCTTCTTGCTGCTCTCGGGGCTTGGCTTGGCTGGCAGGCACTTCCGCTTATTATCCTACTTTCATCTGTTGTC
GGACTAGTTTTTGGCATCATCCAGTTGAGACTAAAGAAACAAGGCATTGAAAAAGCCTTTCCGTTTGGTCCATATCTAGC
TATTGCTGGTTGGGTGTATCTGATTGTGGGTGAGCAAATCGTTAGCTGGTATCTCGGCTTCTATTTCGGAGGTGCCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70	95.89	0.671
pilD	Vibrio cholerae strain A1552	65.505	98.288	0.644
pilD	Acinetobacter baumannii D1279779	50.883	96.918	0.493
pilD	Acinetobacter nosocomialis M2	50.883	96.918	0.493
pilD	Neisseria gonorrhoeae MS11	50.365	93.836	0.473