Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RVY75_RS20590 Genome accession   NZ_CP136381
Coordinates   4077466..4079205 (-) Length   579 a.a.
NCBI ID   WP_002165085.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4072466..4084205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS20560 (RVY75_20560) - 4072662..4072895 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  RVY75_RS20565 (RVY75_20565) - 4072947..4073675 (-) 729 WP_002015085.1 glycerophosphodiester phosphodiesterase -
  RVY75_RS20570 (RVY75_20570) - 4073726..4073872 (+) 147 WP_001247671.1 YycC family protein -
  RVY75_RS20575 (RVY75_20575) - 4074113..4074675 (-) 563 Protein_4001 PRK06770 family protein -
  RVY75_RS20580 (RVY75_20580) spo0A 4074973..4075767 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  RVY75_RS20585 (RVY75_20585) spoIVB 4076054..4077346 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  RVY75_RS20590 (RVY75_20590) recN 4077466..4079205 (-) 1740 WP_002165085.1 DNA repair protein RecN Machinery gene
  RVY75_RS20595 (RVY75_20595) argR 4079476..4079925 (-) 450 WP_002015076.1 arginine repressor ArgR -
  RVY75_RS20600 (RVY75_20600) - 4080068..4080907 (-) 840 WP_002015074.1 TlyA family RNA methyltransferase -
  RVY75_RS20605 (RVY75_20605) dxs 4080911..4082803 (-) 1893 WP_002165084.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RVY75_RS20610 (RVY75_20610) ispA 4083112..4084005 (-) 894 WP_002015072.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65653.89 Da        Isoelectric Point: 5.1569

>NTDB_id=890459 RVY75_RS20590 WP_002165085.1 4077466..4079205(-) (recN) [Bacillus mycoides strain PAMC 29501]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
GVYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=890459 RVY75_RS20590 WP_002165085.1 4077466..4079205(-) (recN) [Bacillus mycoides strain PAMC 29501]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGCTTATTCTATGTAGAAGATGACAAACATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GGCGTATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAGAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTGGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCTATTGCAAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAATTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGTACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599