Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RVY75_RS20580 Genome accession   NZ_CP136381
Coordinates   4074973..4075767 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain PAMC 29501     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4069973..4080767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS20555 (RVY75_20555) - 4070452..4072524 (-) 2073 WP_002015086.1 sigma-54-dependent Fis family transcriptional regulator -
  RVY75_RS20560 (RVY75_20560) - 4072662..4072895 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  RVY75_RS20565 (RVY75_20565) - 4072947..4073675 (-) 729 WP_002015085.1 glycerophosphodiester phosphodiesterase -
  RVY75_RS20570 (RVY75_20570) - 4073726..4073872 (+) 147 WP_001247671.1 YycC family protein -
  RVY75_RS20575 (RVY75_20575) - 4074113..4074675 (-) 563 Protein_4001 PRK06770 family protein -
  RVY75_RS20580 (RVY75_20580) spo0A 4074973..4075767 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  RVY75_RS20585 (RVY75_20585) spoIVB 4076054..4077346 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  RVY75_RS20590 (RVY75_20590) recN 4077466..4079205 (-) 1740 WP_002165085.1 DNA repair protein RecN Machinery gene
  RVY75_RS20595 (RVY75_20595) argR 4079476..4079925 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=890458 RVY75_RS20580 WP_002015081.1 4074973..4075767(-) (spo0A) [Bacillus mycoides strain PAMC 29501]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=890458 RVY75_RS20580 WP_002015081.1 4074973..4075767(-) (spo0A) [Bacillus mycoides strain PAMC 29501]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTGGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818