Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU48_RS09060 Genome accession   NZ_AP024878
Coordinates   1973652..1975055 (-) Length   467 a.a.
NCBI ID   WP_141347344.1    Uniprot ID   -
Organism   Vibrio inusitatus strain LMG 23434     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968652..1980055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS09025 moaE 1969349..1969798 (-) 450 WP_141347351.1 molybdopterin synthase catalytic subunit MoaE -
  OCU48_RS09030 moaD 1969800..1970045 (-) 246 WP_141347350.1 molybdopterin synthase sulfur carrier subunit -
  OCU48_RS09035 moaC 1970042..1970521 (-) 480 WP_141347349.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU48_RS09040 moaB 1970528..1971040 (-) 513 WP_141347348.1 molybdenum cofactor biosynthesis protein B -
  OCU48_RS09045 moaA 1971096..1972085 (-) 990 WP_141347347.1 GTP 3',8-cyclase MoaA -
  OCU48_RS09050 yvcK 1972415..1973299 (+) 885 WP_141347346.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU48_RS09055 - 1973300..1973659 (-) 360 WP_141347345.1 Hpt domain-containing protein -
  OCU48_RS09060 luxO 1973652..1975055 (-) 1404 WP_141347344.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU48_RS09065 uvrB 1975075..1977120 (-) 2046 WP_141347343.1 excinuclease ABC subunit UvrB -
  OCU48_RS09075 rsxA 1979025..1979606 (+) 582 WP_065209629.1 electron transport complex subunit RsxA -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51927.53 Da        Isoelectric Point: 5.5513

>NTDB_id=89021 OCU48_RS09060 WP_141347344.1 1973652..1975055(-) (luxO) [Vibrio inusitatus strain LMG 23434]
MSKNKIANKQLRLLMVEDTLSVATLYQTYLSTLNLDIQIVSSGEAALEHLEQQSIDLMLLDLRLPDMTGMDVLKKVRARA
PKVPVIFMTAHGSIEVAVEAMRAGAHDFLIKPCEADQLRITVSKAIHQTQNGKQDVLGEINQYQGFIGSSSSMQKVYKTI
DSAASSKASIFITGESGTGKEVCAEAIHSVSNRSPEPFIALNCAAIPKDLIESELFGHVKGAFTGAATDRKGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTYQKVGSSKLSAVDVRFVCATNKDPWQEVKRGRFREDLYYRLYVIPLHLPPLRDR
GDDIVEIAYSLLGFTSLEENKQFGKFNQEVLRHFVAYPWPGNVRQLQNVIRNIVVLNEGEEVKMDMLPAPLDRFKVASYS
EDVIDQFIDPEQNDDSKKIVPLALVERRTIERAIELCGGSIPAAATELDVSASTLYRKLEKWEKGRG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=89021 OCU48_RS09060 WP_141347344.1 1973652..1975055(-) (luxO) [Vibrio inusitatus strain LMG 23434]
ATGTCAAAAAATAAAATAGCAAACAAGCAGTTGAGATTGTTGATGGTAGAGGACACGCTTTCAGTAGCCACCTTATACCA
GACATATCTTTCAACACTGAATTTAGATATTCAAATAGTCTCTAGTGGTGAGGCTGCATTGGAACATCTTGAACAGCAGT
CGATTGATCTTATGCTGTTGGATCTGCGCCTGCCCGATATGACGGGGATGGACGTATTGAAAAAGGTGCGAGCAAGAGCG
CCTAAAGTCCCTGTTATCTTCATGACAGCACATGGTTCTATCGAGGTTGCAGTTGAGGCGATGAGAGCCGGGGCACATGA
CTTTTTGATTAAACCCTGTGAGGCAGATCAGCTCCGCATAACAGTATCTAAAGCGATACACCAAACCCAAAATGGTAAGC
AAGATGTTCTGGGAGAAATAAATCAATATCAAGGCTTTATTGGCTCAAGTTCTAGTATGCAAAAGGTCTATAAAACCATT
GATTCGGCAGCATCGAGTAAGGCGAGTATCTTTATTACTGGTGAGAGCGGAACGGGTAAAGAAGTGTGTGCTGAGGCCAT
TCACTCTGTCAGTAATCGAAGTCCTGAGCCCTTTATTGCATTGAATTGTGCTGCTATCCCTAAAGACCTCATTGAAAGTG
AACTGTTTGGCCATGTAAAAGGTGCATTTACCGGCGCTGCAACAGATCGAAAAGGCGCCGCTGAATTGGCTGATGGCGGA
ACTCTATTTTTAGACGAATTATGTGAGATGGATTTGGATTTACAAACCAAATTATTACGCTTTATTCAGACCGGTACTTA
TCAAAAAGTAGGCTCATCAAAGCTCAGTGCAGTTGATGTGCGCTTTGTGTGTGCGACCAACAAAGATCCATGGCAAGAAG
TGAAGAGAGGTCGTTTTCGAGAGGATCTTTATTACCGCCTTTATGTTATCCCACTGCATTTGCCACCATTAAGAGACCGA
GGCGATGACATTGTTGAGATTGCGTACTCTTTACTCGGTTTTACCTCTCTTGAAGAGAACAAACAATTTGGCAAATTTAA
CCAGGAGGTACTTCGTCATTTCGTCGCTTATCCTTGGCCGGGTAACGTACGCCAGTTACAAAATGTGATTCGTAATATTG
TCGTTCTCAATGAAGGCGAAGAAGTGAAAATGGACATGTTACCGGCTCCCTTAGATCGATTTAAGGTCGCTTCATATTCC
GAAGACGTTATCGATCAGTTCATAGACCCTGAACAAAATGACGACAGCAAAAAGATCGTGCCGTTGGCTTTGGTCGAACG
CAGAACGATAGAAAGAGCCATCGAACTGTGTGGTGGCAGTATACCTGCCGCTGCCACTGAACTGGATGTCAGTGCATCAA
CACTCTATAGGAAACTAGAAAAATGGGAGAAAGGGCGTGGATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

68.597

96.146

0.66
  pilR Pseudomonas aeruginosa PAK

38.158

97.645

0.373

Multiple sequence alignment