Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCU48_RS06970 Genome accession   NZ_AP024878
Coordinates   1518551..1519966 (+) Length   471 a.a.
NCBI ID   WP_141345289.1    Uniprot ID   A0A4Y3HUW8
Organism   Vibrio inusitatus strain LMG 23434     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1513551..1524966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS06950 - 1513649..1514821 (+) 1173 WP_141345286.1 alpha/beta hydrolase -
  OCU48_RS06955 - 1514818..1515843 (-) 1026 WP_141345287.1 succinylglutamate desuccinylase -
  OCU48_RS06960 - 1515941..1516600 (+) 660 WP_141345288.1 hypothetical protein -
  OCU48_RS06965 - 1516747..1518116 (+) 1370 Protein_1312 L-cystine transporter -
  OCU48_RS06970 sbcB 1518551..1519966 (+) 1416 WP_141345289.1 exodeoxyribonuclease I Machinery gene
  OCU48_RS06975 - 1519970..1520332 (+) 363 WP_141345290.1 CidA/LrgA family protein -
  OCU48_RS06980 - 1520334..1521011 (+) 678 WP_141345291.1 CidB/LrgB family autolysis modulator -
  OCU48_RS06985 cdd 1521159..1522052 (+) 894 WP_141345292.1 cytidine deaminase -
  OCU48_RS06990 purT 1522203..1523378 (+) 1176 WP_141345293.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCU48_RS06995 ihfA 1523483..1523785 (-) 303 WP_017027221.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 54196.91 Da        Isoelectric Point: 6.2646

>NTDB_id=89019 OCU48_RS06970 WP_141345289.1 1518551..1519966(+) (sbcB) [Vibrio inusitatus strain LMG 23434]
MHTDQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADLNVIGEPLVIYCRPPADYLPNPEAALVTGITPQKAMKEGLSEPE
FITAIHNEMSRPNTCTLGYNSVRFDDEVTRYTCYRNFIEPYEWSYKNGNSRWDLLDVMRACHALRPEGVNWPKNDEGNTS
FRLEHLSVANGIEHSNAHDAMADVYATIEMAKKIKQSQPKLFDFFFKHRGKQKLNSLVDIVNMTPLVHVSGMLSTEHQKT
ALIAPIGWTPIKALITVDLTQDITPLIELTADEIKDRLYTKRSDLEEGQLPIPVKLVHLNKCPILAPLGVLTTDAIEHTQ
IDKDKCLQRQQLLLQHPQIREKLDTVFLENRQFPVSPNIEEQLYNGFFSPADKAQMRIIREAKPEVLGSLDIQVTDPRIA
PLLFNYRARNFFHTLTDQEQKRWLLHCRDKFEQEVPNYLLNLESLGTQHQGDEHKMKILKAIYHYVEQLVS

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=89019 OCU48_RS06970 WP_141345289.1 1518551..1519966(+) (sbcB) [Vibrio inusitatus strain LMG 23434]
ATGCACACGGACCAACCCACATTCTTTTTCTTTGATTACGAAACTTGGGGAGTCAGTCCTGCAAAAGATAGACCATGTCA
GTTTGCTGGTGTGCGCACCGATGCCGACTTAAACGTCATTGGAGAGCCGCTCGTTATCTATTGCAGACCTCCTGCAGATT
ATCTACCAAACCCCGAAGCCGCGCTCGTTACCGGTATTACACCGCAAAAAGCGATGAAAGAAGGTTTATCCGAACCAGAG
TTTATCACCGCGATTCACAATGAAATGAGCCGCCCAAATACCTGCACCCTTGGATACAACAGCGTACGATTCGACGATGA
AGTCACTCGTTACACCTGCTATCGCAATTTCATCGAACCCTATGAGTGGAGTTATAAAAACGGTAACTCTCGATGGGATC
TACTGGATGTTATGCGAGCCTGTCATGCACTGCGACCAGAAGGGGTAAACTGGCCAAAAAACGATGAAGGAAATACCAGT
TTTCGATTGGAACATTTATCGGTAGCGAACGGCATTGAACACAGTAATGCTCATGATGCTATGGCTGATGTTTACGCCAC
TATTGAGATGGCAAAAAAGATTAAACAGAGTCAGCCTAAGTTATTTGATTTTTTCTTTAAACACCGAGGAAAGCAAAAAC
TAAACTCTCTTGTCGATATCGTAAACATGACACCTCTGGTTCATGTATCTGGTATGCTTAGTACAGAGCATCAAAAAACA
GCTCTAATTGCGCCTATTGGTTGGACCCCGATAAAAGCATTAATTACTGTCGATCTGACGCAAGACATTACGCCCTTAAT
AGAGCTTACAGCGGATGAGATCAAAGACAGACTTTATACCAAGCGTAGTGATCTTGAAGAAGGACAGTTACCTATTCCTG
TAAAACTCGTTCATCTGAACAAGTGCCCTATTCTTGCTCCTCTTGGTGTATTGACAACTGACGCTATCGAACATACACAG
ATCGATAAAGACAAATGTTTACAGAGGCAACAACTACTTCTGCAACATCCGCAGATTCGAGAAAAACTTGATACTGTGTT
TTTAGAAAATAGACAATTTCCAGTGAGTCCAAACATAGAAGAGCAACTCTACAATGGCTTCTTCTCACCGGCGGATAAAG
CGCAAATGCGGATTATTCGTGAAGCTAAACCAGAGGTATTAGGTTCTCTTGATATTCAGGTCACTGACCCTCGCATCGCT
CCTTTGCTCTTTAACTATCGAGCTCGAAACTTCTTTCACACCCTGACCGATCAAGAACAAAAACGTTGGTTACTACACTG
CCGAGATAAATTTGAGCAAGAAGTGCCTAATTATCTGTTGAATTTAGAGAGTCTTGGTACACAACATCAAGGCGATGAAC
ATAAGATGAAGATCCTCAAGGCAATCTATCACTACGTTGAACAATTGGTCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-185)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3HUW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

66.026

99.363

0.656

Multiple sequence alignment