Detailed information NTG0089010

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU48_RS02205
• Genome accession: NZ_AP024878
• Coordinates: 458558..459532 (+)
• Length: 324 a.a.
• NCBI ID: WP_141346824.1
• Uniprot ID: A0A4Y3HZE0
• Organism: Vibrio inusitatus strain LMG 23434
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 453558..464532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU48_RS02170	ftsB	453770..454045 (+)	276	WP_141346831.1	cell division protein FtsB	-
OCU48_RS02175	ispD	454067..454762 (+)	696	WP_141346830.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU48_RS02180	ispF	454765..455244 (+)	480	WP_141346829.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU48_RS02185	truD	455261..456244 (+)	984	WP_141346828.1	tRNA pseudouridine(13) synthase TruD	-
OCU48_RS02190	surE	456259..457002 (+)	744	WP_141346827.1	5'/3'-nucleotidase SurE	-
OCU48_RS02195	-	457003..457629 (+)	627	WP_141346826.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU48_RS02200	nlpD	457634..458506 (+)	873	WP_141346825.1	murein hydrolase activator NlpD	-
OCU48_RS02205	rpoS	458558..459532 (+)	975	WP_141346824.1	RNA polymerase sigma factor RpoS	Regulator
OCU48_RS02210	mutS	459855..462422 (-)	2568	WP_141346823.1	DNA mismatch repair protein MutS	-
OCU48_RS02215	pncC	462505..462999 (+)	495	WP_208727212.1	nicotinamide-nucleotide amidase	-
OCU48_RS02220	recA	463105..464130 (+)	1026	WP_141346821.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37206.12 Da
• Isoelectric Point: 4.6073

>NTDB_id=89010 OCU48_RS02205 WP_141346824.1 458558..459532(+) (rpoS) [Vibrio inusitatus strain LMG 23434]
MSMDNTAAKVEDLTEDKVSAEVEENSIVEKVETQVKEEFDASTKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEVS
TQDDDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGLNMESLFN
FDSE

Nucleotide

• Length: 975 bp

>NTDB_id=89010 OCU48_RS02205 WP_141346824.1 458558..459532(+) (rpoS) [Vibrio inusitatus strain LMG 23434]
ATGAGTATGGATAACACTGCAGCAAAAGTGGAAGACCTAACAGAAGATAAAGTAAGTGCGGAAGTAGAAGAAAATAGTAT
TGTTGAAAAGGTCGAAACTCAGGTAAAAGAAGAATTTGACGCTTCAACGAAGAATCTAGATGCAACGCAACTTTATCTAG
GCGAAATTGGCTTCTCACCACTCCTAACAGCAGAAGAAGAGGTTCTTTACGCAAGACGAGCACTTCGCGGAGATGAAGCA
GCACGCAAGCGTATGATTGAAAGTAACCTTCGTCTGGTTGTCAAAATTTCTCGTCGTTACAGCAATCGTGGCTTAGCGCT
ATTGGACCTAATTGAAGAGGGGAACCTCGGTCTAATTCGTGCGGTAGAAAAATTCGATCCGGAGCGTGGCTTCCGATTCT
CAACCTACGCAACCTGGTGGATTCGACAAACCATCGAACGCGCCCTAATGAATCAAACCCGCACTATTCGCTTGCCGATC
CATGTGGTTAAAGAGTTAAATATTTATCTCAGAACAGCGCGTGAGTTATCTCAGAAATTAGACCATGAACCTACCGCGGA
AGAGATTGCTCAGCAACTCGATAAACCCGTTGATGATGTAAGTAAGATGCTACGCCTCAACGAACGTGTGAGCTCTGTGG
ACACACCAATTGGTGGCGACGGTGACAAGGCATTGCTTGATATTATTCCTGATATCAACAACTCAGATCCTGAAGTGTCT
ACTCAAGATGACGATATTAAGCACTCTCTTATCGATTGGCTCGATGAGTTAAATCCAAAACAGAAAGAAGTACTTGCTCG
TCGCTTCGGTTTGCTTGGTTATGAACCTTCAACCCTAGAAGAAGTAGGACGCGAAATTAACCTAACTCGTGAGCGTGTAC
GTCAGATCCAAGTAGAGGGTCTACGTCGACTACGTGAAATCCTGTTAAAGCAAGGACTGAATATGGAGTCGCTGTTTAAC
TTTGACAGTGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

3D structure

• AlphaFold DB: A0A4Y3HZE0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.133	100	0.852