Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   OCU45_RS17235 Genome accession   NZ_AP024874
Coordinates   356762..358819 (-) Length   685 a.a.
NCBI ID   WP_072954844.1    Uniprot ID   A0A1M4TRW2
Organism   Vibrio gazogenes strain ATCC 29988     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 351762..363819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS17225 - 352010..355084 (+) 3075 WP_072954838.1 efflux RND transporter permease subunit -
  OCU45_RS17230 cqsA 355518..356690 (+) 1173 WP_072954841.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCU45_RS17235 cqsS 356762..358819 (-) 2058 WP_072954844.1 hybrid sensor histidine kinase/response regulator Regulator
  OCU45_RS17240 - 359539..359859 (+) 321 WP_072954845.1 hypothetical protein -
  OCU45_RS17245 - 359971..360456 (+) 486 WP_131814846.1 GNAT family N-acetyltransferase -
  OCU45_RS17250 - 360624..362981 (-) 2358 WP_072954848.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 79478.17 Da        Isoelectric Point: 6.0567

>NTDB_id=89003 OCU45_RS17235 WP_072954844.1 356762..358819(-) (cqsS) [Vibrio gazogenes strain ATCC 29988]
MNVIKKIYQYAEPNLSSVGWLGFFGFPVYYYVWTYLFPQPYESLWLRVIGTLLCLGLALRSFVPIKIQKYLPYYYYFTMG
YCLPFFFGYMMIMNDYNNVWVMSFTSSICLHILLIHETKSLIIQTTISILIAYFIAIYINGNELSSFHDWAYIPIFLFVY
IFGNVFYFRNQISHEAKVSIAKSFGAGIAHEMRNPLSAIKSSVDLLQSLLHTKHPTDSVPHYMIEQNDYQMVNELLDNMN
HTVDSANETINLLLTSIDQNRIPTSTFKIYTISDIAQHAIQSFSYKNPLDRLAINIHIEDDFRFLGSDILLKYAFYNLFK
NAFYYQNNENFHIEISITTQDKWNQITVTDNGAGIAKEHLQDIFKDFYTHGKNGGYGLGLPFCRRIMEAFGGKIECASVL
GQWTEFTLLFPTESSSEMRKLKEELVNAKSLLYVGNEGDVRLRLKKQAQQMGFHIETITLPEATKRKEYDFEFDVIMVDL
NQINRQWDLLTVLESQLHFSEAQIHYIYDADSQYPIHIERHLSVYPLERSYLLDQSASILYHLFFELPEIVEADRNVIPL
KQERSEKCILIVDDNHSVRNLTAILLEKQGYHVLQASNGQEALGTMEAHEVDLILMDIEMPILDGIETTSTIRRSQKPYR
HIPILGHTGDTNTPTLKRIRNSGMNDYIIKPADTNNLLDKLANWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=89003 OCU45_RS17235 WP_072954844.1 356762..358819(-) (cqsS) [Vibrio gazogenes strain ATCC 29988]
ATGAATGTTATCAAGAAAATATACCAATATGCAGAACCTAATTTATCCTCCGTGGGATGGCTGGGATTTTTCGGCTTTCC
TGTATATTACTATGTCTGGACTTATCTTTTCCCTCAACCATATGAATCTCTTTGGTTAAGAGTCATTGGAACACTCCTCT
GTCTTGGCCTAGCGTTACGTTCTTTCGTGCCCATAAAAATCCAAAAGTATCTCCCTTACTACTACTACTTTACGATGGGA
TATTGCCTGCCATTTTTCTTTGGCTACATGATGATCATGAATGATTATAATAATGTCTGGGTTATGTCTTTCACATCTTC
CATTTGTTTGCATATACTACTTATTCATGAAACAAAATCGCTGATCATTCAAACAACTATATCCATACTTATCGCTTATT
TTATCGCTATCTATATCAACGGAAATGAACTGAGTTCTTTTCACGATTGGGCATATATCCCAATATTTCTTTTCGTCTAT
ATTTTCGGTAACGTATTTTATTTTCGAAATCAGATATCTCATGAAGCAAAGGTCTCCATTGCAAAATCCTTCGGAGCAGG
AATTGCGCATGAAATGCGTAATCCGCTCAGTGCAATCAAATCATCTGTAGATCTGCTTCAATCGCTACTGCATACTAAGC
ATCCGACCGATTCAGTGCCCCATTACATGATCGAACAGAATGATTATCAGATGGTTAATGAACTACTCGACAATATGAAT
CACACCGTTGATTCTGCTAATGAGACAATCAATCTGCTCCTTACTTCAATAGACCAAAATCGGATTCCGACATCGACTTT
CAAAATCTACACTATCAGTGACATTGCGCAGCATGCCATCCAATCGTTCAGTTATAAAAACCCACTCGATCGACTGGCTA
TCAATATTCATATTGAAGACGATTTCAGATTCCTAGGCAGCGACATTTTGCTAAAGTATGCTTTTTATAATTTATTCAAA
AATGCATTTTATTATCAAAATAATGAGAACTTTCACATTGAAATTTCTATTACGACTCAAGACAAATGGAATCAAATAAC
CGTTACAGATAATGGTGCTGGGATTGCCAAAGAGCACCTTCAAGATATTTTTAAAGACTTTTATACACACGGTAAAAACG
GAGGGTATGGTCTGGGATTACCATTCTGTCGACGCATTATGGAAGCTTTCGGTGGAAAAATTGAATGCGCTTCCGTGTTA
GGTCAGTGGACAGAATTCACACTCTTATTCCCAACCGAATCATCTTCGGAAATGAGAAAACTCAAAGAAGAATTGGTGAA
TGCAAAATCTTTACTTTACGTTGGTAACGAGGGTGACGTTCGGCTGCGGCTGAAAAAACAGGCACAGCAGATGGGATTTC
ATATCGAGACCATCACATTGCCCGAGGCGACCAAACGCAAGGAATATGATTTCGAGTTTGATGTGATCATGGTCGATCTC
AACCAAATTAATCGGCAATGGGATTTACTGACTGTTCTAGAATCTCAGCTTCATTTCTCTGAAGCACAAATCCACTATAT
TTATGATGCCGATAGCCAATATCCGATTCATATCGAACGCCATCTTTCTGTCTATCCGCTGGAAAGAAGTTATTTACTTG
ATCAAAGCGCCTCGATTCTATATCACTTATTTTTTGAGCTGCCAGAAATAGTTGAAGCCGATAGAAATGTCATACCACTC
AAACAGGAGCGCAGCGAAAAATGCATCCTGATCGTGGACGATAATCATTCCGTTCGCAACTTGACCGCGATTCTTTTAGA
GAAGCAGGGCTATCATGTTTTACAAGCATCAAATGGTCAAGAGGCTCTGGGAACGATGGAGGCGCACGAAGTTGATCTGA
TTCTGATGGATATTGAGATGCCTATTCTTGATGGCATCGAAACTACCAGTACGATTCGCCGCTCCCAGAAACCTTATCGA
CATATTCCAATTCTTGGTCACACGGGTGATACCAATACACCAACGTTGAAACGAATTCGGAATTCTGGAATGAATGATTA
TATTATTAAACCAGCAGATACAAATAACTTACTTGATAAGCTAGCAAATTGGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(569-681)

His Kinase A (phospho-acceptor) domain (HisKA)

(184-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4TRW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.13

100

0.495

Multiple sequence alignment