Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCU45_RS17230 Genome accession   NZ_AP024874
Coordinates   355518..356690 (+) Length   390 a.a.
NCBI ID   WP_072954841.1    Uniprot ID   A0A1M4TRY8
Organism   Vibrio gazogenes strain ATCC 29988     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 350518..361690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS17220 - 350865..352007 (+) 1143 WP_072954835.1 efflux RND transporter periplasmic adaptor subunit -
  OCU45_RS17225 - 352010..355084 (+) 3075 WP_072954838.1 efflux RND transporter permease subunit -
  OCU45_RS17230 cqsA 355518..356690 (+) 1173 WP_072954841.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCU45_RS17235 cqsS 356762..358819 (-) 2058 WP_072954844.1 hybrid sensor histidine kinase/response regulator Regulator
  OCU45_RS17240 - 359539..359859 (+) 321 WP_072954845.1 hypothetical protein -
  OCU45_RS17245 - 359971..360456 (+) 486 WP_131814846.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43947.26 Da        Isoelectric Point: 6.1865

>NTDB_id=89002 OCU45_RS17230 WP_072954841.1 355518..356690(+) (cqsA) [Vibrio gazogenes strain ATCC 29988]
MFNYPKSLPEFIESRIDFLMKDLINTDYGKNLVVGITPTLEDIVMQSNDYLDISEHIDIREQLIKSLQHKKNDMFMSSIF
LHDDNHKHILEDEISKYTGFSNSFISQSGWSANVSLLQALCVPETNVYIDFFAHMSMWEGARYSHANIHPFMHNNCNHLK
KLIQRHGPGIIVVDSVYSTIGTVAPLEDIVAIAHEYNCVSVVDESHSLGIYGQNGAGILNELGLSEKVDFMTASLAKAFA
YRAGIICTNSDFGHCIPYAAFSNIFSSTMMTHEIPALKATLDVIRNADDRREKLFALSKKLRLGLKEIGLDIRSQSHIVS
LETGDEFNTKKIRTILEEQGIFGSVFCRPATPKNKNIIRFSINSSLSFEDVDKIIIVCDSLLKDSSVYFK

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=89002 OCU45_RS17230 WP_072954841.1 355518..356690(+) (cqsA) [Vibrio gazogenes strain ATCC 29988]
ATGTTTAACTATCCTAAGTCTCTACCTGAATTTATTGAGTCAAGAATTGATTTTTTAATGAAAGATCTTATCAATACGGA
TTATGGGAAGAACTTAGTTGTTGGGATAACACCGACACTCGAAGATATCGTGATGCAGAGTAATGATTATTTAGATATAT
CTGAACATATAGATATTCGTGAACAATTGATCAAATCACTGCAACACAAGAAAAATGACATGTTTATGTCATCAATATTT
CTACATGATGATAATCATAAACATATCTTAGAAGATGAGATATCAAAGTACACTGGCTTTAGTAACTCATTTATCTCTCA
GTCTGGATGGAGTGCGAATGTCTCTTTATTACAAGCTCTTTGTGTACCAGAAACCAATGTCTATATTGATTTTTTTGCTC
ATATGTCGATGTGGGAAGGGGCTCGCTATAGTCATGCGAATATTCATCCATTTATGCATAATAACTGTAATCATTTGAAA
AAATTGATCCAACGCCATGGCCCCGGGATTATCGTGGTGGACTCTGTCTACAGTACCATCGGAACCGTAGCGCCTTTAGA
AGATATTGTTGCAATCGCTCATGAGTATAATTGTGTTTCAGTTGTGGATGAATCGCACTCTTTAGGGATCTACGGGCAGA
ATGGCGCAGGCATATTAAATGAGCTGGGTCTATCGGAAAAAGTTGATTTCATGACTGCAAGCTTAGCAAAAGCATTTGCC
TACCGTGCTGGTATCATTTGCACGAATAGCGATTTTGGTCACTGTATCCCATATGCTGCATTTTCGAATATTTTTAGTTC
AACGATGATGACTCATGAAATTCCAGCATTAAAAGCAACATTGGATGTAATAAGAAATGCTGATGATAGAAGAGAGAAAT
TGTTTGCTTTATCAAAAAAACTGAGATTAGGATTGAAGGAAATTGGTCTTGATATAAGAAGCCAGTCTCATATTGTTTCA
CTAGAAACGGGTGATGAATTTAATACTAAAAAAATTAGGACAATACTTGAAGAACAAGGTATTTTTGGTTCGGTTTTTTG
CCGTCCAGCAACACCTAAAAATAAAAATATTATTCGATTTTCGATTAATAGTTCGTTAAGTTTTGAAGATGTAGATAAAA
TAATAATCGTCTGCGATTCATTATTAAAAGATAGTTCTGTGTATTTTAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(43-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4TRY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.359

100

0.544

Multiple sequence alignment