Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RX793_RS07745 Genome accession   NZ_CP136263
Coordinates   1674850..1675287 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1669850..1680287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS07730 (RX793_07735) - 1672708..1673070 (-) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -
  RX793_RS07735 (RX793_07740) hxlA 1673302..1673937 (+) 636 WP_024084873.1 3-hexulose-6-phosphate synthase -
  RX793_RS07740 (RX793_07745) hxlB 1673934..1674491 (+) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  RX793_RS07745 (RX793_07750) nucA/comI 1674850..1675287 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RX793_RS07750 (RX793_07755) nin/comJ 1675309..1675707 (+) 399 WP_014304317.1 competence protein ComJ Regulator
  RX793_RS07755 (RX793_07760) - 1675748..1675966 (-) 219 Protein_1515 family 1 glycosylhydrolase -
  RX793_RS07760 - 1675998..1676243 (-) 246 WP_109567708.1 family 1 glycosylhydrolase -
  RX793_RS07765 (RX793_07765) - 1676185..1676460 (-) 276 WP_369719109.1 YckD family protein -
  RX793_RS07770 (RX793_07770) - 1676577..1677011 (-) 435 WP_021494203.1 RDD family protein -
  RX793_RS07775 (RX793_07775) - 1677026..1678162 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  RX793_RS07780 (RX793_07780) - 1678227..1679429 (-) 1203 WP_024084872.1 GTP-binding protein -
  RX793_RS07785 (RX793_07785) - 1679543..1679707 (+) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=889974 RX793_RS07745 WP_003156588.1 1674850..1675287(+) (nucA/comI) [Bacillus velezensis strain 0039]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=889974 RX793_RS07745 WP_003156588.1 1674850..1675287(+) (nucA/comI) [Bacillus velezensis strain 0039]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641