Detailed information NTG0088994

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU45_RS12545
• Genome accession: NZ_AP024873
• Coordinates: 2812448..2813434 (-)
• Length: 328 a.a.
• NCBI ID: WP_072955848.1
• Uniprot ID: A0A1M4WHS6
• Organism: Vibrio gazogenes strain ATCC 29988
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2807448..2818434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU45_RS12530	-	2807556..2809613 (+)	2058	WP_072955855.1	ATP-binding protein	-
OCU45_RS12535	hpxO	2809682..2810836 (-)	1155	WP_072955853.1	FAD-dependent urate hydroxylase HpxO	-
OCU45_RS12540	-	2811306..2812352 (+)	1047	WP_072955850.1	pectate lyase	-
OCU45_RS12545	rpoS	2812448..2813434 (-)	987	WP_072955848.1	RNA polymerase sigma factor RpoS	Regulator
OCU45_RS12550	-	2813516..2814424 (-)	909	WP_072955845.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU45_RS12555	-	2814427..2815053 (-)	627	WP_072955843.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU45_RS12560	surE	2815059..2815799 (-)	741	WP_072955840.1	5'/3'-nucleotidase SurE	-
OCU45_RS12565	truD	2815803..2816849 (-)	1047	WP_072955837.1	tRNA pseudouridine(13) synthase TruD	-
OCU45_RS12570	ispF	2816930..2817403 (-)	474	WP_072955834.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU45_RS12575	ispD	2817437..2818129 (-)	693	WP_072955832.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU45_RS12580	ftsB	2818130..2818411 (-)	282	WP_072955829.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37684.48 Da
• Isoelectric Point: 4.6075

>NTDB_id=88994 OCU45_RS12545 WP_072955848.1 2812448..2813434(-) (rpoS) [Vibrio gazogenes strain ATCC 29988]
MSKSNSVTKVDQFDFDSGAFDLNTLDNEVSSDATSVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIAFELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=88994 OCU45_RS12545 WP_072955848.1 2812448..2813434(-) (rpoS) [Vibrio gazogenes strain ATCC 29988]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGGAGCGTTTGATCTCAATACATTGGACAA
CGAGGTCAGTTCTGACGCTACATCCGTTGAAACTCGAGAAGATTATGAAGTAACTTCCAAGAGCTTAGACGCAACTCAAC
TCTATTTAGGCGAAATCGGTTTTTCACCTTTGTTAACCGCAGAGGAAGAAATCCTGTACGCTCGTCGGGCTCTTCGGGGA
GATGAGGCCGCTCGTAAGCGAATGATTGAGAGTAATCTACGTCTCGTTGTTAAAATATCGCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTAATCGAAGAAGGTAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCAGAAAGAGGAT
TTCGTTTTTCTACGTATGCAACCTGGTGGATCAGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATCCACGTTGTCAAAGAACTCAATATTTATTTGCGGACAGCACGTGAGCTATCACAGAAGTTAGACCATGAACC
AACAGCGGAAGACATTGCGTTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTTCGTCTGAACGAACGTATTA
GTTCTGTTGATACACCTATTGGTGGTGATGGTGATAAAGCATTGTTGGATATCATTCCTGATGCCAAACACTATGACCCA
GAATATTCGACAGAAGATGATGATATCAAATCTTCACTCTTACATTGGTTAGATGAACTAAATCCGAAACAGAAAGAAGT
GTTGGCAAGACGCTTTGGTTTACTCGGGTATGAACCATCCACTTTAGAAGAAGTTGGGAAAGAGATTAATCTAACCCGTG
AGCGAGTTCGCCAAATCCAAGTCGAAGGCCTGCGTCGTTTAAGAGAAATTCTACTGAAACAAGGCTTGAATATGGAATCT
TTGTTCGATGTAGAGAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

3D structure

• AlphaFold DB: A0A1M4WHS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.53	100	0.835