NTDB

Overview

Name	med	Type	Regulator
Locus tag	RW107_RS06385	Genome accession	NZ_CP136257
Coordinates	1250299..1251252 (+)	Length	317 a.a.
NCBI ID	WP_014476425.1	Uniprot ID	A0A0K6M9I2
Organism	Bacillus subtilis strain A9
Function	regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1245299..1256252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RW107_RS06360 (RW107_06360)	argF	1247130..1248089 (+)	960	WP_046160277.1	ornithine carbamoyltransferase	-
RW107_RS06365 (RW107_06365)	yjzC	1248175..1248354 (+)	180	WP_003245356.1	YjzC family protein	-
RW107_RS06370 (RW107_06370)	yjzD	1248400..1248585 (-)	186	WP_003245236.1	YjzD family protein	-
RW107_RS06375 (RW107_06375)	-	1248835..1249569 (+)	735	WP_041850982.1	hypothetical protein	-
RW107_RS06380 (RW107_06380)	-	1249651..1250208 (+)	558	WP_014476424.1	hypothetical protein	-
RW107_RS06385 (RW107_06385)	med	1250299..1251252 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
RW107_RS06390 (RW107_06390)	comZ	1251267..1251458 (+)	192	WP_072175657.1	ComG operon transcriptional repressor ComZ	Regulator
RW107_RS06395 (RW107_06395)	yjzB	1251488..1251715 (-)	228	WP_121591633.1	spore coat protein YjzB	-
RW107_RS06400 (RW107_06400)	fabH	1251880..1252818 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
RW107_RS06405 (RW107_06405)	fabF	1252841..1254082 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
RW107_RS06410 (RW107_06410)	yjaZ	1254158..1254943 (+)	786	WP_021479557.1	DUF2268 domain-containing protein	-
RW107_RS06415 (RW107_06415)	appD	1255135..1256121 (+)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 35310.84 Da Isoelectric Point: 4.6031

                                >NTDB_id=889867 RW107_RS06385 WP_014476425.1 1250299..1251252(+) (med) [Bacillus subtilis strain A9]

MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED

FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ

PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL

GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

Download Length: 954 bp

                                >NTDB_id=889867 RW107_RS06385 WP_014476425.1 1250299..1251252(+) (med) [Bacillus subtilis strain A9]

TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT

TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTATTGAATA

TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT

TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA

TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGAGAAGCAA

TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG

CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG

GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG

GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG

GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAACAAAGG

CACCCTTGAGGGCGGCGACCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGGACATTCAGCCCGCTCGTCGATA

AAGACTTTCAGCAAAGAATCGCTAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997

Detailed information NTG0889867