Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU45_RS04930 Genome accession   NZ_AP024873
Coordinates   1067014..1068414 (+) Length   466 a.a.
NCBI ID   WP_072962825.1    Uniprot ID   A0A1M5GE40
Organism   Vibrio gazogenes strain ATCC 29988     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062014..1073414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS04910 - 1062472..1063326 (-) 855 WP_072962831.1 LysR family transcriptional regulator -
  OCU45_RS04915 - 1063716..1063892 (-) 177 Protein_951 integrase arm-type DNA-binding domain-containing protein -
  OCU45_RS04925 uvrB 1064710..1066740 (+) 2031 WP_072962827.1 excinuclease ABC subunit UvrB -
  OCU45_RS04930 luxO 1067014..1068414 (+) 1401 WP_072962825.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU45_RS04935 luxU 1068417..1068767 (+) 351 WP_072962822.1 quorum-sensing phosphorelay protein LuxU -
  OCU45_RS04940 yvcK 1068822..1069742 (-) 921 WP_072962820.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU45_RS04945 moaA 1070048..1071031 (+) 984 WP_072962817.1 GTP 3',8-cyclase MoaA -
  OCU45_RS04950 moaB 1071203..1071709 (+) 507 WP_072962812.1 molybdenum cofactor biosynthesis protein B -
  OCU45_RS04955 moaC 1071728..1072207 (+) 480 WP_072962811.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU45_RS04960 moaD 1072204..1072449 (+) 246 WP_072962808.1 molybdopterin synthase sulfur carrier subunit -
  OCU45_RS04965 moaE 1072451..1072903 (+) 453 WP_072962805.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52540.17 Da        Isoelectric Point: 5.0329

>NTDB_id=88982 OCU45_RS04930 WP_072962825.1 1067014..1068414(+) (luxO) [Vibrio gazogenes strain ATCC 29988]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RCDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEERKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNAEENA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=88982 OCU45_RS04930 WP_072962825.1 1067014..1068414(+) (luxO) [Vibrio gazogenes strain ATCC 29988]
ATGCAATCTGAACAGTTACCACAAAAAAGTAGATATCTACTGATGGTTGAAGATACAGCGTCTGTTGCTGTGCTGTATCG
AACCTATCTTGAACCTCTGGATATTGACATCAATATTGTCGGTACGGGGAAAGAGGCGTTAGAGAGTCTTGAAAAAAGAG
AACCCGATCTGATTCTGCTTGATTTACGACTTCCGGATATGACAGGGATGGATGTTTTACATGAGGTGAAACGGAAATAC
CCGGATGTTCCCGTCATTTTCATGACCGCTCATGGCTCAATTGATACGGCTGTCGAAGCCATGCGTTATGGTGCTCAAGA
TTTTCTAATTAAGCCATGCGAAGCAGACCGATTACGCGTTACGGTGAATAATGCAATTCGTAAAGCTTCAAAAATTAAGA
GTGATTCCGATGATCCGCGCAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACCATGCAGGCCGTTTATCGAACC
ATTGACTCTGCGGCAGCGAGTAAAGCCAGTATTTTTATTACCGGAGAAAGTGGCACAGGGAAAGAAGTATGTGCAGAAGC
CATTCATGCTGCAAGTCGGCGAGGTGACAAACCTTTCATTGCGATTAACTGTGCAGCAATTCCGAAAGATTTAATTGAAA
GTGAACTGTTCGGTCACGTGAAAGGGGCTTTTACGGGAGCTGCAACTGATCGGCAGGGTGCAGCGGAGCTCGCTGATGGC
GGGACTCTATTTCTGGATGAACTCTGTGAGATGGATTTGGACTTACAGACTAAGCTGTTGCGGTTTATCCAAACCGGTAC
ATTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTGTGTGCGACAAACCGTGACCCGTGGAAAG
AGGTTCAGGAAGGTCGTTTCCGGGAAGATTTGTACTATCGTCTATATGTGATCCCACTCCATCTACCGCCACTTCGGGAG
CGATGTGATGATGTTATTGAAATCGCTTATTCTTTGCTCGGTTATATGTCCAAAGAAGAAGAGAAAGACTTTGTTCGTCT
TGCCGCTGAAGTCGTGGAACGTTTCAGACAGTACGAATGGCCGGGCAATGTCCGCCAATTGCAGAATGTTTTACGTAATG
TGGTCGTGCTGAATCAGGGAAAAGAAATCACGCTGAGTATGTTACCACCGCCATTGAATCAACCGAAAGAAAGTTATCTC
CGCTTGGTTCAACCGATGATGGAAGAGAGAAAACCTTCAGTCCATGAAATATTTCCGCTCTGGATGACTGAAAAAATGGC
CATCGAAAATGCCATTGATGCCTGTGAAGGAAATATTCCGAAAGCTGCAGGTTATCTGGAAGTGAGTCCCTCAACCATTT
ACCGTAAGTTACAATCTTGGAATGCAGAAGAGAACGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5GE40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.248

95.923

0.837

Multiple sequence alignment