Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OCU45_RS02630 Genome accession   NZ_AP024873
Coordinates   565301..565921 (-) Length   206 a.a.
NCBI ID   WP_021020566.1    Uniprot ID   A0A1M5CKH9
Organism   Vibrio gazogenes strain ATCC 29988     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 560301..570921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS02620 aceF 561623..563506 (+) 1884 WP_072960052.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCU45_RS02625 lpdA 563752..565176 (+) 1425 WP_072960050.1 dihydrolipoyl dehydrogenase -
  OCU45_RS02630 hapR 565301..565921 (-) 621 WP_021020566.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU45_RS02635 hpt 566346..566879 (+) 534 WP_072960047.1 hypoxanthine phosphoribosyltransferase -
  OCU45_RS02640 can 566977..567645 (-) 669 WP_072960044.1 carbonate dehydratase -
  OCU45_RS02645 - 568066..569049 (+) 984 WP_072960041.1 ABC transporter ATP-binding protein -
  OCU45_RS02650 - 569063..569833 (+) 771 WP_072960039.1 ABC transporter permease -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24135.49 Da        Isoelectric Point: 6.2222

>NTDB_id=88980 OCU45_RS02630 WP_021020566.1 565301..565921(-) (hapR) [Vibrio gazogenes strain ATCC 29988]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVHQFSNFL
ADNIDVDSYIKDNLYHLTHKMTKLVFEDCHWLKVWFEWSASTRDEVWPLFVSTNHTNRLLVKNMFTNAIERGDVSDHYDP
EHLVTLFLGIFYSLFVQVNRLQDQKEIDDLVNSYLDMLCIYNNRRA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=88980 OCU45_RS02630 WP_021020566.1 565301..565921(-) (hapR) [Vibrio gazogenes strain ATCC 29988]
ATGGACGCTTCAATAGAAAAACGCCCTCGTACACGATTATCACCTCAGAAACGTAAACTTCAGCTGATGGAAATTGCGCT
TGAAGTCTTCGCCAAACGGGGTATCGGACGTGGTGGACATGCAGATATCGCTGAAATTGCTCAGGTATCTGTCGCAACTG
TATTTAACTATTTCCCAACTCGTGAGGATTTAGTTGATGATGTTCTCACTCACGTCGTTCACCAGTTCTCAAACTTCCTC
GCAGACAACATCGATGTCGATAGTTATATCAAAGATAATCTCTATCATCTGACACATAAAATGACAAAACTGGTCTTTGA
AGATTGTCATTGGCTGAAAGTGTGGTTTGAATGGAGTGCATCGACCCGCGACGAAGTCTGGCCGTTATTCGTATCGACCA
ACCATACAAACCGTCTGTTGGTAAAAAATATGTTTACCAATGCAATCGAACGCGGCGATGTCAGCGATCATTATGATCCT
GAACATTTAGTCACGCTGTTCCTCGGAATTTTCTATTCCCTGTTTGTACAAGTGAACCGTTTACAAGATCAAAAAGAGAT
CGATGATCTCGTGAACAGCTACTTGGACATGTTATGCATTTATAACAACCGTCGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5CKH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

73.892

98.544

0.728
  hapR Vibrio cholerae strain A1552

73.892

98.544

0.728
  opaR Vibrio parahaemolyticus RIMD 2210633

75.377

96.602

0.728

Multiple sequence alignment