Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   RVY82_RS04065 Genome accession   NZ_CP136242
Coordinates   787209..788480 (+) Length   423 a.a.
NCBI ID   WP_338432930.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain GBJ     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 782209..793480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY82_RS04035 rpsB 782368..783147 (+) 780 WP_003681957.1 30S ribosomal protein S2 -
  RVY82_RS04040 tsf 783238..784116 (+) 879 WP_003681955.1 translation elongation factor Ts -
  RVY82_RS04045 pyrH 784197..784922 (+) 726 WP_003681954.1 UMP kinase -
  RVY82_RS04050 frr 784922..785482 (+) 561 WP_003685219.1 ribosome recycling factor -
  RVY82_RS04055 - 785615..786382 (+) 768 WP_015638805.1 isoprenyl transferase -
  RVY82_RS04060 - 786399..787187 (+) 789 WP_003681950.1 phosphatidate cytidylyltransferase -
  RVY82_RS04065 eeP 787209..788480 (+) 1272 WP_338432930.1 RIP metalloprotease RseP Regulator
  RVY82_RS04070 - 788514..790235 (+) 1722 WP_338432932.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46186.60 Da        Isoelectric Point: 6.6202

>NTDB_id=889771 RVY82_RS04065 WP_338432930.1 787209..788480(+) (eeP) [Limosilactobacillus fermentum strain GBJ]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRNGKTYHTTVTPKATKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFALLMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=889771 RVY82_RS04065 WP_338432930.1 787209..788480(+) (eeP) [Limosilactobacillus fermentum strain GBJ]
TTGATCATCACCATCATTACTTTTATCATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTAGTACGCGAGTTTTCGATTGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTTGGGGGCTACGTCCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTCCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTTTTGGGCGGGGTGACCAAGGATT
CGGTGGCTGCCAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCAATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGGCCACCAAACAGGGGAGCCAAACGGTTGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGTACCTCGCAGGCCACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGTTTTGCCCTCTTGATGATCCTGATGGTCCTTGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(209-269)

Peptidase family M50 (Peptidase_M50)

(7-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.349

100

0.485
  eeP Streptococcus thermophilus LMD-9

48.349

100

0.485