Detailed information NTG0088962

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU28_RS09475
• Genome accession: NZ_AP024871
• Coordinates: 2045294..2046277 (-)
• Length: 327 a.a.
• NCBI ID: WP_261815956.1
• Uniprot ID: -
• Organism: Vibrio gallicus strain CIP 107863
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2040294..2051277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU28_RS09460	-	2040659..2041144 (-)	486	WP_261815953.1	CinA family protein	-
OCU28_RS09465	-	2041402..2042316 (+)	915	WP_261815954.1	dienelactone hydrolase family protein	-
OCU28_RS09470	mutS	2042641..2045232 (+)	2592	WP_261815955.1	DNA mismatch repair protein MutS	-
OCU28_RS09475	rpoS	2045294..2046277 (-)	984	WP_261815956.1	RNA polymerase sigma factor RpoS	Regulator
OCU28_RS09480	-	2046326..2047144 (-)	819	WP_261815957.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU28_RS09485	-	2047149..2047775 (-)	627	WP_261815958.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU28_RS09490	surE	2047779..2048513 (-)	735	WP_261815959.1	5'/3'-nucleotidase SurE	-
OCU28_RS09495	truD	2048510..2049538 (-)	1029	WP_261815960.1	tRNA pseudouridine(13) synthase TruD	-
OCU28_RS09500	ispF	2049547..2050026 (-)	480	WP_261815961.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU28_RS09505	ispD	2050023..2050724 (-)	702	WP_261815962.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU28_RS09510	ftsB	2050745..2051020 (-)	276	WP_261815963.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37328.21 Da
• Isoelectric Point: 4.6470

>NTDB_id=88962 OCU28_RS09475 WP_261815956.1 2045294..2046277(-) (rpoS) [Vibrio gallicus strain CIP 107863]
MSMDNTAAKVEDLNQNGEEAEVASVELEPTAKAPAREAKEEFDASAKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LSIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDP
EVSTQDEDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFNFDSE

Nucleotide

• Length: 984 bp

>NTDB_id=88962 OCU28_RS09475 WP_261815956.1 2045294..2046277(-) (rpoS) [Vibrio gallicus strain CIP 107863]
ATGAGTATGGATAACACAGCAGCAAAAGTGGAAGACTTGAATCAAAATGGTGAAGAGGCAGAGGTGGCAAGTGTTGAATT
AGAGCCCACCGCCAAAGCCCCCGCTCGAGAGGCAAAAGAAGAATTTGACGCCTCAGCAAAGAATCTAGACGCTACTCAGC
TTTATCTTGGAGAGATCGGTTTTTCTCCTCTATTAACCGCAGAAGAAGAAGTGCTGTATGCGCGTCGTGCTCTGCGTGGT
GATGAGGCGGCGCGAAAGCGTATGATTGAAAGTAACCTTCGCTTAGTTGTAAAAATCTCTCGTCGATATAGTAATCGTGG
TCTGGCATTGTTAGACCTTATTGAAGAGGGAAACCTAGGCTTGATTCGCGCGGTAGAGAAATTTGATCCTGAGCGTGGTT
TCCGTTTTTCGACGTATGCTACGTGGTGGATTCGACAAACTATCGAACGCGCTTTAATGAACCAAACCCGCACCATTCGC
TTATCTATTCATGTTGTTAAAGAGCTCAATATTTACCTGCGCACTGCGCGTGAGTTGTCTCAAAAACTGGATCATGAACC
AACAGCAGAAGAGATTGCTCAACAGCTCGATAAACCAGTGGATGACGTCAGCAAGATGTTGCGTCTTAATGAGCGAGTAA
GCTCAGTTGATACCCCTATTGGTGGTGATGGCGATAAAGCACTGCTAGATATCATTCCTGATATTAATAACTCTGATCCA
GAGGTTTCAACCCAGGACGAAGATATCAAGCACTCACTGATTGATTGGCTTGATGAGTTGAACCCAAAGCAAAAAGAAGT
ATTGGCAAGACGTTTTGGGTTATTGGGTTATGAGCCATCAACGCTCGAAGAGGTAGGGCGCGAGATCAATCTTACTCGTG
AACGTGTTCGTCAAATCCAGGTTGAAGGCTTGCGTCGTTTACGTGAGATCCTACTCAAACAAGGGCTGAATATGGAATCC
CTGTTTAACTTTGATAGCGAATAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.229	100	0.835