Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU28_RS09360 Genome accession   NZ_AP024871
Coordinates   2024090..2024605 (-) Length   171 a.a.
NCBI ID   WP_261815942.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2019090..2029605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS09335 rimM 2019128..2019658 (-) 531 WP_261815937.1 ribosome maturation factor RimM -
  OCU28_RS09340 rpsP 2019687..2019935 (-) 249 WP_261815938.1 30S ribosomal protein S16 -
  OCU28_RS09345 ffh 2020186..2021577 (-) 1392 WP_261815939.1 signal recognition particle protein -
  OCU28_RS09350 - 2021867..2022661 (+) 795 WP_261815940.1 inner membrane protein YpjD -
  OCU28_RS09355 - 2022770..2024032 (+) 1263 WP_261815941.1 HlyC/CorC family transporter -
  OCU28_RS09360 luxS 2024090..2024605 (-) 516 WP_261815942.1 S-ribosylhomocysteine lyase Regulator
  OCU28_RS09365 gshA 2024620..2026185 (-) 1566 WP_261815943.1 glutamate--cysteine ligase -
  OCU28_RS09370 - 2026328..2029195 (-) 2868 WP_261815944.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18671.43 Da        Isoelectric Point: 4.8250

>NTDB_id=88959 OCU28_RS09360 WP_261815942.1 2024090..2024605(-) (luxS) [Vibrio gallicus strain CIP 107863]
MPLLDSFTVDHTKMHAPAVRVAKKMTTPGGDTITVFDLRFTQPNKALLSEAGIHTLEHLYAGFMRDHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSESEVAQAWLAAMQDVLKVETQNKIPELNEYQCGTAAMHSLEDAKAIAQGIVDAGISVNKNDELA
LPEEMLKTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=88959 OCU28_RS09360 WP_261815942.1 2024090..2024605(-) (luxS) [Vibrio gallicus strain CIP 107863]
ATGCCTTTATTAGATAGCTTTACTGTCGATCATACAAAAATGCACGCCCCAGCTGTACGCGTAGCTAAAAAAATGACAAC
TCCGGGCGGCGATACCATTACGGTATTTGACCTTCGCTTTACCCAGCCAAACAAAGCGCTGCTTTCAGAGGCGGGAATTC
ATACCCTAGAGCACCTATATGCTGGCTTTATGCGTGATCATCTAAACGGTGACAGTGTGGAGATTATCGATATATCTCCA
ATGGGGTGCCGTACTGGTTTTTATATGAGCTTAATTGGTACTCCTTCAGAGAGCGAAGTGGCACAAGCGTGGCTAGCCGC
GATGCAAGATGTGCTTAAAGTTGAGACTCAAAACAAGATTCCTGAGCTGAATGAATATCAATGTGGTACTGCGGCAATGC
ACTCTTTAGAAGATGCAAAAGCCATTGCGCAAGGGATTGTGGATGCTGGTATCTCAGTGAATAAGAATGACGAGTTGGCC
CTTCCAGAAGAGATGCTAAAAACACTGAAGGTGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

83.041

100

0.83

Multiple sequence alignment