Detailed information NTG0088958

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCU28_RS09305
• Genome accession: NZ_AP024871
• Coordinates: 2015341..2016219 (+)
• Length: 292 a.a.
• NCBI ID: WP_261815933.1
• Uniprot ID: -
• Organism: Vibrio gallicus strain CIP 107863
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2010341..2021219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU28_RS09280	ampD	2010463..2010999 (-)	537	WP_261815928.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
OCU28_RS09285	nadC	2011099..2011986 (+)	888	WP_261815929.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OCU28_RS09290	-	2012218..2012622 (+)	405	WP_261815930.1	pilin	-
OCU28_RS09295	-	2012622..2014085 (+)	1464	WP_261815931.1	GspE/PulE family protein	-
OCU28_RS09300	-	2014078..2015292 (+)	1215	WP_261815932.1	type II secretion system F family protein	-
OCU28_RS09305	pilD	2015341..2016219 (+)	879	WP_261815933.1	A24 family peptidase	Machinery gene
OCU28_RS09310	coaE	2016219..2016830 (+)	612	WP_261817472.1	dephospho-CoA kinase	-
OCU28_RS09315	zapD	2016859..2017599 (+)	741	WP_261817473.1	cell division protein ZapD	-
OCU28_RS09320	yacG	2017609..2017803 (+)	195	WP_261815934.1	DNA gyrase inhibitor YacG	-
OCU28_RS09325	rplS	2017967..2018320 (-)	354	WP_261815935.1	50S ribosomal protein L19	-
OCU28_RS09330	trmD	2018360..2019106 (-)	747	WP_261815936.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCU28_RS09335	rimM	2019128..2019658 (-)	531	WP_261815937.1	ribosome maturation factor RimM	-
OCU28_RS09340	rpsP	2019687..2019935 (-)	249	WP_261815938.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32365.76 Da
• Isoelectric Point: 8.1972

>NTDB_id=88958 OCU28_RS09305 WP_261815933.1 2015341..2016219(+) (pilD) [Vibrio gallicus strain CIP 107863]
MLDYYFIQFPALFPILATLLGLIIGSFLNVVIYRLPIIMEREWKTEFAQAYPESKLEVPSGHYSLSLPRSQCPKCNTQIQ
ARDNIPLLGWLLLRGKCRYCEAKISPRYPLIELLSGALCLVIAIQFGFSLYAVALLGLTWVLICATFIDLDTMLLPDSLT
LPLMWAGIALALTGISSITLSQAVIGAMAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQALPLIILLSSLV
GLIFGIIQLRLKKQGIEKAFPFGPYLAVAGWIYVIAGDQIIHWYLGIYFGGA

Nucleotide

• Length: 879 bp

>NTDB_id=88958 OCU28_RS09305 WP_261815933.1 2015341..2016219(+) (pilD) [Vibrio gallicus strain CIP 107863]
ATGCTCGATTATTACTTCATCCAATTTCCGGCTCTTTTTCCAATACTTGCAACCCTATTAGGCTTGATTATTGGCAGCTT
TTTAAATGTCGTTATCTATCGCCTTCCTATCATCATGGAAAGGGAATGGAAAACCGAGTTTGCACAAGCTTACCCAGAAT
CGAAACTTGAGGTACCTAGTGGGCATTATTCCCTTAGCTTACCTCGCTCTCAATGCCCTAAATGCAATACTCAAATCCAA
GCACGAGACAATATTCCGCTCTTAGGTTGGCTACTTTTGCGAGGAAAATGTCGCTACTGCGAGGCGAAGATAAGCCCGCG
CTATCCACTTATCGAGCTATTATCTGGCGCCTTATGCCTGGTGATCGCAATACAGTTTGGATTCAGCCTATATGCTGTAG
CACTGCTTGGGCTTACTTGGGTTTTAATCTGCGCCACTTTTATCGACCTCGATACCATGTTGCTCCCTGATAGCCTCACC
CTTCCCTTAATGTGGGCAGGCATTGCCTTAGCTTTAACCGGAATAAGCTCAATCACGCTATCCCAGGCTGTGATTGGGGC
TATGGCAGGGTATTTGTCGCTGTGGAGTGTGTACTGGTTATTCAAGCTAGTTACAGGCAAAGAAGGGATGGGCTATGGAG
ACTTTAAGCTATTAGCCGCTCTAGGTGCTTGGTTAGGTTGGCAAGCCCTACCCCTTATTATTTTACTGTCATCTCTTGTT
GGTCTTATATTTGGCATTATCCAGTTAAGGCTCAAAAAGCAAGGCATTGAAAAAGCCTTTCCATTCGGTCCCTATTTAGC
CGTTGCGGGCTGGATATATGTCATTGCCGGTGACCAAATTATTCACTGGTATTTAGGCATTTACTTTGGGGGTGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-126)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	69.286	95.89	0.664
pilD	Vibrio cholerae strain A1552	67.596	98.288	0.664
pilD	Acinetobacter nosocomialis M2	50.709	96.575	0.49
pilD	Neisseria gonorrhoeae MS11	51.825	93.836	0.486
pilD	Acinetobacter baumannii D1279779	50	96.575	0.483