Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCU28_RS05300 Genome accession   NZ_AP024871
Coordinates   1139889..1141301 (-) Length   470 a.a.
NCBI ID   WP_261817288.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134889..1146301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS05275 ihfA 1136187..1136486 (+) 300 WP_261817284.1 integration host factor subunit alpha -
  OCU28_RS05280 purT 1136549..1137724 (-) 1176 WP_261817285.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCU28_RS05285 cdd 1137857..1138747 (-) 891 WP_261817286.1 cytidine deaminase -
  OCU28_RS05290 - 1138846..1139520 (-) 675 WP_261817435.1 CidB/LrgB family autolysis modulator -
  OCU28_RS05295 - 1139520..1139885 (-) 366 WP_261817287.1 CidA/LrgA family protein -
  OCU28_RS05300 sbcB 1139889..1141301 (-) 1413 WP_261817288.1 exodeoxyribonuclease I Machinery gene
  OCU28_RS05305 - 1141360..1143129 (-) 1770 WP_261817289.1 bifunctional molybdopterin-guanine dinucleotide biosynthesis adaptor protein MobB/molybdopterin molybdotransferase MoeA -
  OCU28_RS05310 mobA 1143126..1143713 (-) 588 WP_261817290.1 molybdenum cofactor guanylyltransferase MobA -
  OCU28_RS05315 - 1143691..1144407 (-) 717 WP_261817291.1 energy-coupling factor ABC transporter ATP-binding protein -
  OCU28_RS05320 - 1144415..1145113 (-) 699 WP_261817292.1 ABC transporter permease -
  OCU28_RS05325 - 1145156..1145974 (-) 819 WP_261817293.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53724.14 Da        Isoelectric Point: 5.6252

>NTDB_id=88953 OCU28_RS05300 WP_261817288.1 1139889..1141301(-) (sbcB) [Vibrio gallicus strain CIP 107863]
MQAPQATFFFFDYETWGVSPAKDRPCQFAGVRTDSELNVIGEPLVIYCQPPSDYLPNPEAALVTGITPQKALQEGLPEPE
FIAAIHAQLSQENTTSLGYNSVRFDDEVTRYTCYRNFLDPYEWSYKNGNSRWDLLDVMRACHALRPEGINWPTNEQGNTS
FKLEHLSVANGIEHSNAHDAMADVYATIELAKKVKQAQPRLFNFFYQHRGKNKLNSLVDIANMTPLVHVSGMLSNHLKTA
IVAPIGWTPQKALICVDLTKDISPLLNLDAQQIKTRLYTPRADLAPDQVPIPLKLVHLNKCPILAPLGVLTDDAITRTEI
DKADCLSKLEQLKHSDDIREKLDQVFSAAREFAKSCDVDQQLYDGFFNPSDKAQMQIIREADPQALGSMDLQVKDDRIKP
LLFKYRARHYFQTLTDQEQKQWLLLCRDKFEQELPEYMLNLEHLGEQYQSDERKMRVLKAVYQYVQQLVS

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=88953 OCU28_RS05300 WP_261817288.1 1139889..1141301(-) (sbcB) [Vibrio gallicus strain CIP 107863]
ATGCAGGCTCCTCAAGCGACTTTTTTCTTCTTCGATTATGAGACATGGGGAGTCAGCCCAGCTAAAGACAGACCTTGCCA
ATTTGCTGGGGTTCGTACCGATTCTGAATTGAATGTTATCGGCGAACCCTTGGTTATTTACTGCCAACCACCGTCGGATT
ATCTCCCTAATCCAGAAGCGGCTTTAGTGACCGGTATCACCCCTCAAAAAGCCCTACAAGAGGGACTACCTGAACCAGAA
TTTATTGCTGCCATCCATGCCCAGCTTAGTCAAGAAAATACCACTAGCCTTGGCTATAACAGCGTTCGCTTCGATGACGA
AGTAACTCGTTATACCTGCTACCGTAACTTCCTTGATCCCTATGAATGGAGCTACAAAAACGGCAACTCACGCTGGGATC
TACTAGATGTCATGCGTGCATGCCACGCATTGCGCCCCGAGGGCATTAACTGGCCAACCAATGAGCAAGGAAACACCAGC
TTCAAGCTTGAGCACCTTTCCGTCGCCAATGGCATAGAGCACAGTAATGCTCACGATGCGATGGCCGACGTCTACGCTAC
CATAGAGCTTGCTAAAAAAGTCAAACAGGCTCAACCAAGGCTATTTAACTTCTTCTATCAGCATCGCGGAAAAAATAAAC
TCAATAGCCTAGTTGATATTGCCAACATGACACCACTAGTACATGTGTCAGGCATGCTGTCGAATCACCTCAAGACCGCG
ATAGTCGCTCCTATTGGGTGGACGCCGCAAAAAGCGCTTATTTGTGTGGATCTCACCAAGGATATCTCCCCACTGTTAAA
CTTAGATGCGCAACAGATCAAAACGCGCTTATATACCCCAAGGGCTGATCTTGCTCCAGACCAAGTGCCTATTCCGCTTA
AACTGGTGCATCTCAACAAGTGCCCTATTCTCGCTCCCCTTGGCGTACTGACAGATGACGCTATAACAAGGACAGAAATA
GACAAAGCTGACTGCCTATCTAAGCTTGAACAGCTCAAGCACAGCGACGACATTAGAGAAAAATTGGATCAAGTATTCTC
CGCTGCTCGAGAGTTTGCCAAAAGTTGTGACGTTGACCAGCAGCTGTATGATGGTTTCTTCAACCCCTCAGACAAAGCGC
AGATGCAGATTATACGTGAAGCCGATCCTCAGGCTTTAGGCTCTATGGATCTACAGGTCAAAGATGACCGTATTAAGCCA
CTGCTGTTTAAATATCGAGCTCGCCATTATTTTCAAACACTCACCGATCAAGAACAAAAACAATGGTTGCTTCTGTGTCG
AGACAAGTTTGAGCAAGAGCTTCCTGAGTACATGCTAAACTTAGAGCACCTCGGTGAACAGTATCAAAGTGATGAACGCA
AGATGCGCGTCCTAAAAGCGGTTTATCAATACGTACAACAACTAGTCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(209-467)

Exonuclease (RNase_T)

(10-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

65.18

100

0.653

Multiple sequence alignment