Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU28_RS03775 Genome accession   NZ_AP024871
Coordinates   804407..805768 (+) Length   453 a.a.
NCBI ID   WP_261817424.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 799407..810768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS03760 - 799877..800971 (+) 1095 WP_261817008.1 alkene reductase -
  OCU28_RS03770 uvrB 802313..804358 (+) 2046 WP_261817009.1 excinuclease ABC subunit UvrB -
  OCU28_RS03775 luxO 804407..805768 (+) 1362 WP_261817424.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU28_RS03780 - 805761..806090 (+) 330 WP_261817010.1 Hpt domain-containing protein -
  OCU28_RS03785 yvcK 806082..806969 (-) 888 WP_261817011.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU28_RS03790 moaA 807266..808255 (+) 990 WP_261817012.1 GTP 3',8-cyclase MoaA -
  OCU28_RS03795 moaB 808329..808841 (+) 513 WP_261817013.1 molybdenum cofactor biosynthesis protein B -
  OCU28_RS03800 moaC 808848..809327 (+) 480 WP_261817014.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU28_RS03805 moaD 809324..809569 (+) 246 WP_261817015.1 molybdopterin synthase sulfur carrier subunit -
  OCU28_RS03810 moaE 809572..810024 (+) 453 WP_261817016.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50140.47 Da        Isoelectric Point: 5.0008

>NTDB_id=88951 OCU28_RS03775 WP_261817424.1 804407..805768(+) (luxO) [Vibrio gallicus strain CIP 107863]
MVEDTLSVATLYQGYLASLDIDIELVSSGQQAITSIQANIPTLILLDLKLPDMTGMDVLKQVREFAPKIPVVFMTAHGSI
DVAVEAMRQGAQDFLLKPCDANRLRVTISKVLHQAQNNKPLLIKETNTYQGFIGSSASMQKVYRTIDSAANSRASIFITG
ESGTGKEVCAEAIHSVSNRVDQPFIALNCAAIPKDLIESELFGHVKGAFTGASTDRKGAAELANGGTLFLDELCEMELDL
QTKLLRFIQTGTFQKVGSSTLSRVDVRFVCATNKDPWQEVCKGRFREDLYYRLYVIPLQLPPLRERGDDIVEIAHSLLGF
MSVEESKDFNRFSADVLKRFLAYPWPGNVRQLQNVIRNIVVLNQGEQVELDMLPSPLDSLDINDYSAVNVAQFIEPLVDE
QPATIIPLAQIEKHVIERAIQLCNGSIPAAANQLDVSASTIYRKIERWEKGHG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=88951 OCU28_RS03775 WP_261817424.1 804407..805768(+) (luxO) [Vibrio gallicus strain CIP 107863]
ATGGTGGAAGATACTCTATCAGTAGCTACCTTGTATCAGGGCTATTTGGCTTCGTTAGATATTGATATTGAGTTGGTTTC
TAGTGGGCAACAAGCGATTACCAGTATTCAGGCTAACATCCCAACCTTGATTCTGTTGGACTTAAAACTGCCTGATATGA
CAGGTATGGATGTTCTGAAACAGGTCAGAGAGTTTGCGCCTAAGATACCGGTAGTATTTATGACCGCTCATGGCTCCATT
GATGTTGCTGTGGAGGCGATGAGGCAGGGGGCACAGGACTTTCTTCTCAAGCCATGCGATGCGAATCGTTTGCGAGTGAC
CATATCAAAGGTTTTGCATCAGGCTCAAAATAATAAGCCGTTATTGATAAAGGAAACCAATACTTATCAAGGCTTTATTG
GCTCAAGTGCCAGCATGCAAAAGGTATATCGCACCATAGATTCAGCGGCAAATAGTCGGGCTAGCATCTTTATTACCGGA
GAGAGTGGCACTGGTAAGGAGGTATGCGCTGAGGCTATTCACTCGGTGAGTAATCGAGTTGATCAGCCCTTTATTGCCTT
GAACTGTGCGGCAATTCCTAAAGATTTGATTGAAAGTGAATTGTTTGGGCATGTTAAAGGGGCGTTTACCGGTGCATCGA
CAGACCGCAAGGGAGCGGCCGAGCTTGCCAATGGCGGCACCTTGTTTCTTGATGAGCTATGTGAAATGGAGTTGGATCTA
CAAACCAAGTTGTTGCGCTTTATTCAAACCGGTACCTTTCAAAAGGTGGGGTCATCTACGTTAAGTCGTGTTGATGTTCG
GTTTGTATGCGCCACCAATAAAGACCCTTGGCAAGAGGTTTGCAAAGGTCGATTCAGAGAAGATCTCTATTACCGTTTAT
ACGTTATTCCACTGCAACTTCCACCGCTACGAGAGCGGGGTGATGATATTGTTGAAATTGCCCATTCTTTGCTTGGTTTT
ATGTCTGTTGAAGAATCGAAAGATTTTAATCGCTTCTCTGCGGACGTGTTAAAGCGGTTTTTAGCTTATCCTTGGCCTGG
AAATGTGCGCCAATTGCAGAATGTCATTCGTAATATTGTGGTGTTGAATCAGGGAGAACAAGTTGAGCTTGATATGCTAC
CTTCGCCTCTAGATAGTCTCGATATTAATGATTATTCGGCAGTGAATGTGGCACAGTTTATTGAGCCTTTAGTGGATGAA
CAACCAGCCACGATTATTCCCCTTGCTCAGATAGAAAAACATGTGATTGAGAGGGCGATTCAGTTATGTAATGGTTCAAT
TCCAGCTGCTGCCAATCAATTGGATGTCAGTGCCTCTACAATCTATCGTAAAATTGAGCGTTGGGAGAAAGGCCATGGTT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

68.514

99.558

0.682

Multiple sequence alignment