Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU28_RS00710 Genome accession   NZ_AP024871
Coordinates   147616..148620 (-) Length   334 a.a.
NCBI ID   WP_261816475.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 142616..153620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS00685 - 142645..143784 (+) 1140 WP_315972397.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  OCU28_RS00690 - 143789..144955 (+) 1167 WP_261816471.1 nucleotide sugar dehydrogenase -
  OCU28_RS00695 hslU 145014..146345 (-) 1332 WP_261816472.1 HslU--HslV peptidase ATPase subunit -
  OCU28_RS00700 hslV 146360..146884 (-) 525 WP_261816473.1 ATP-dependent protease subunit HslV -
  OCU28_RS00705 - 147009..147551 (-) 543 WP_261816474.1 SPOR domain-containing protein -
  OCU28_RS00710 cytR 147616..148620 (-) 1005 WP_261816475.1 DNA-binding transcriptional regulator CytR Regulator
  OCU28_RS00715 priA 148808..151009 (-) 2202 WP_261816476.1 primosomal protein N' -
  OCU28_RS00720 rpmE 151252..151470 (+) 219 WP_261816477.1 50S ribosomal protein L31 -
  OCU28_RS00725 - 151640..152905 (+) 1266 WP_261816478.1 malic enzyme-like NAD(P)-binding protein -
  OCU28_RS00730 metJ 152955..153272 (-) 318 WP_261816479.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36698.98 Da        Isoelectric Point: 7.4579

>NTDB_id=88946 OCU28_RS00710 WP_261816475.1 147616..148620(-) (cytR) [Vibrio gallicus strain CIP 107863]
MATMKDVAELAGVSTATVSRALMNPEKVSSATRQKVEDAVIQSGYCTSNLLRGMKRNESKTLVVIVPDLSDPYFSEILRG
IEHAASKQGYLVLHGDSQQQKCRDNSLIHLNYSKQADGLILLGTDLPIDARKSEQKNLPPMVMACEYAPELELPTIHIDN
LTASYEAVNYLAHLGHRHIAEITGPPTSTLSSLRSQGFRQALRRAGLPYDSSKSIQADFSFEAGVVAMRKLSSSPSRPTA
VFCHNDIIAIGVIHEAKNMGLRVPEDLSIIGFDNISFSEYCDPPLTTVAQPRFEIGYQAAQVLLNQLRGDKVHIGSRLLD
TELILRKSTKPPCR

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=88946 OCU28_RS00710 WP_261816475.1 147616..148620(-) (cytR) [Vibrio gallicus strain CIP 107863]
ATGGCGACCATGAAGGATGTTGCTGAATTAGCGGGAGTTTCAACGGCAACAGTGTCTAGGGCTCTCATGAATCCAGAAAA
AGTATCTTCTGCAACTAGACAAAAAGTTGAAGATGCAGTTATTCAATCGGGGTATTGTACCAGTAATCTGCTGAGGGGAA
TGAAGCGCAATGAGTCCAAAACCTTAGTTGTTATTGTACCTGACCTTAGTGACCCCTACTTTTCAGAGATATTACGTGGC
ATAGAGCATGCTGCATCTAAACAAGGCTATCTAGTTTTACACGGTGATAGCCAGCAGCAAAAGTGTCGCGATAACTCTTT
AATACACCTTAACTATTCAAAGCAAGCTGATGGTTTAATTCTACTCGGAACCGATCTCCCTATTGATGCTAGAAAATCTG
AACAAAAAAATCTCCCCCCTATGGTTATGGCTTGTGAGTATGCGCCAGAGTTAGAATTACCAACTATCCATATTGATAAT
TTAACAGCATCATATGAAGCGGTGAACTATTTAGCCCATCTAGGACATCGACATATTGCAGAAATTACAGGACCGCCGAC
CTCAACACTATCAAGTTTACGTAGCCAAGGTTTTCGGCAGGCACTGAGAAGAGCAGGCTTACCCTACGACTCATCTAAAT
CAATACAAGCCGACTTTAGCTTTGAAGCCGGTGTTGTCGCGATGCGTAAATTATCTAGCTCCCCTTCGCGCCCCACCGCG
GTATTTTGTCACAACGATATCATTGCAATTGGGGTAATACATGAAGCAAAAAATATGGGATTACGAGTCCCCGAAGACCT
CTCTATCATAGGTTTCGACAATATTTCTTTTTCCGAATACTGTGATCCCCCTTTAACCACAGTTGCCCAGCCACGTTTTG
AAATTGGTTATCAAGCGGCACAGGTACTTTTAAACCAATTGAGAGGTGATAAAGTTCATATTGGCTCTCGTTTGCTCGAT
ACTGAGTTAATATTGCGTAAAAGTACTAAACCACCGTGTCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.671

100

0.647
  cytR Vibrio cholerae C6706

64.072

100

0.641

Multiple sequence alignment