Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAFA27_RS10905 Genome accession   NZ_CP151688
Coordinates   2212777..2214267 (+) Length   496 a.a.
NCBI ID   WP_111883677.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 40288-CIRI     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2207777..2219267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA27_RS10875 (AAFA27_10875) uppS 2207818..2208570 (-) 753 WP_000132219.1 polyprenyl diphosphate synthase -
  AAFA27_RS10880 (AAFA27_10880) frr 2208576..2209130 (-) 555 WP_000606428.1 ribosome recycling factor -
  AAFA27_RS10885 (AAFA27_10885) pyrH 2209216..2209944 (-) 729 WP_000852257.1 UMP kinase -
  AAFA27_RS10890 (AAFA27_10890) rimO 2209996..2211339 (-) 1344 WP_000856678.1 30S ribosomal protein S12 methylthiotransferase RimO -
  AAFA27_RS10895 (AAFA27_10895) - 2211372..2211557 (+) 186 WP_079261097.1 hypothetical protein -
  AAFA27_RS10900 (AAFA27_10900) glnL 2211681..2212790 (+) 1110 WP_000371970.1 nitrogen regulation protein NR(II) -
  AAFA27_RS10905 (AAFA27_10905) luxO 2212777..2214267 (+) 1491 WP_111883677.1 nitrogen regulation protein NR(I) Regulator
  AAFA27_RS10910 (AAFA27_10910) adeN 2214543..2215196 (+) 654 WP_000543879.1 multidrug efflux transcriptional repressor AdeN -
  AAFA27_RS10915 (AAFA27_10915) argF 2215309..2216229 (+) 921 WP_001207983.1 ornithine carbamoyltransferase -
  AAFA27_RS10920 (AAFA27_10920) - 2216423..2216947 (+) 525 WP_000209125.1 protein tyrosine phosphatase family protein -
  AAFA27_RS10925 (AAFA27_10925) ispF 2216944..2217426 (-) 483 WP_000226512.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AAFA27_RS10930 (AAFA27_10930) - 2217530..2218174 (+) 645 WP_001139838.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56109.93 Da        Isoelectric Point: 6.3939

>NTDB_id=889441 AAFA27_RS10905 WP_111883677.1 2212777..2214267(+) (luxO) [Acinetobacter baumannii strain 40288-CIRI]
MSRNKIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLTFLSKVKNSHPDLPVII
MTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAILHINKLQQQEATKTASPLQSTEIIGESPAMQEVFRAIGRLS
QSHITVLINGESGTGKELVAHALHKHSPRRAKPFIALNMAAIPKDLIETELFGHEKGAFTGANTQHQGRFEQANGGTLFL
DEIGDMPFETQTRLLRVLADGEFYRVGGHIPVKVDVRIVAATHQDLEKLVNEGRFREDLYHRLNVIRIHIPKLAHRSEDI
PMLAQHFLARAGKELGVSPKILRTETTDYMQQLPWPGNVRQLENTCRWLTVMITGREVYPEDLPSELKQVPLQKSSETSQ
PAPSFERISLHHWDELLSQWAIQKLKNGEMKILDIATPMFERTLINAALQQTRGRKRHAAELLGWGRNTLTRKLKELGMD
SADDDEDEHKATLSEA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=889441 AAFA27_RS10905 WP_111883677.1 2212777..2214267(+) (luxO) [Acinetobacter baumannii strain 40288-CIRI]
GTGTCGCGAAATAAAATATGGGTTATTGATGACGATCGCGCCATGCGATGGGTACTTGAAAAGACCTTTAAAGAAGAAGG
ATTTGACGTCACCAATTTTGAAGAAGCTCAAACAGCACTGGAACGTTTACATCATGATGCGCCCGATGTCATCTTAACTG
ACATTCGTATGCCAGGTATTGATGGGTTAACTTTCTTATCTAAAGTGAAAAACTCTCACCCCGACTTGCCTGTTATCATT
ATGACAGCGCATTCGGACTTAGAGTCTGCTGTATCAAGCTATCAGACTGGTGCATTTGAGTATTTACCAAAACCATTTGA
TATTGATGAAGCTTTAGCTCTAGTCAATCGAGCGATTTTGCATATCAATAAATTGCAGCAGCAAGAAGCGACAAAAACAG
CTTCACCACTACAATCAACAGAAATTATTGGCGAATCTCCTGCTATGCAAGAGGTTTTCCGAGCGATTGGTCGTTTATCT
CAGTCGCATATTACCGTTTTAATTAATGGTGAATCAGGCACAGGTAAAGAACTGGTTGCGCATGCTTTACATAAACATTC
TCCACGACGCGCTAAGCCTTTTATTGCTTTAAACATGGCAGCAATTCCTAAAGATTTAATCGAAACGGAATTATTTGGTC
ATGAAAAAGGTGCTTTCACGGGTGCAAACACCCAACATCAAGGCCGCTTTGAACAAGCAAATGGTGGAACTCTCTTCCTT
GATGAAATTGGTGACATGCCATTTGAAACCCAGACTCGATTGTTACGTGTGCTCGCAGATGGTGAGTTTTACCGAGTTGG
TGGTCATATACCGGTTAAAGTAGATGTCAGAATTGTCGCGGCAACCCATCAAGACTTAGAAAAACTGGTGAATGAAGGTC
GTTTTCGTGAAGACTTATACCACCGTCTAAATGTTATTCGAATTCATATTCCGAAGCTTGCGCATCGTAGTGAAGACATC
CCGATGCTGGCTCAACATTTCTTGGCTCGCGCGGGTAAAGAGCTAGGTGTAAGTCCAAAGATTTTACGCACTGAAACAAC
GGACTATATGCAACAATTACCTTGGCCTGGTAATGTTCGTCAGCTTGAGAATACCTGCCGTTGGTTAACCGTCATGATTA
CTGGTCGTGAGGTTTATCCGGAAGATTTACCTTCTGAGCTTAAACAGGTTCCACTCCAAAAAAGTAGTGAGACTAGTCAA
CCAGCACCATCTTTTGAACGTATTTCTTTGCACCATTGGGATGAGCTACTAAGCCAATGGGCAATTCAAAAACTTAAAAA
TGGTGAAATGAAGATTTTAGACATTGCTACTCCAATGTTTGAGCGCACCTTAATTAATGCAGCACTACAGCAAACTCGTG
GGCGCAAACGTCATGCAGCCGAACTGTTAGGTTGGGGTCGTAACACCCTAACCAGAAAGTTAAAAGAGCTAGGCATGGAT
TCTGCTGATGATGATGAAGACGAACATAAAGCAACTTTGTCAGAAGCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-477)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

40.222

90.726

0.365
  pilR Pseudomonas aeruginosa PAK

37.292

96.774

0.361