Detailed information NTG0889436

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RW078_RS16875
• Genome accession: NZ_CP136178
• Coordinates: 3588075..3588935 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152274.1
• Uniprot ID: A0AAP1QVT1
• Organism: Acinetobacter baumannii strain ABO21-A045
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3583075..3593935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RW078_RS16855 (RW078_16855)	secG	3583680..3584009 (-)	330	WP_005129832.1	preprotein translocase subunit SecG	-
RW078_RS16860 (RW078_16860)	tpiA	3584022..3584816 (-)	795	WP_218666614.1	triose-phosphate isomerase	-
RW078_RS16865 (RW078_16865)	pilB	3585107..3586819 (+)	1713	WP_317858855.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RW078_RS16870 (RW078_16870)	pilC	3586849..3588075 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
RW078_RS16875 (RW078_16875)	pilD	3588075..3588935 (+)	861	WP_001152274.1	prepilin peptidase	Machinery gene
RW078_RS16880 (RW078_16880)	coaE	3588937..3589533 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RW078_RS16885 (RW078_16885)	-	3589530..3590444 (-)	915	WP_317858856.1	DMT family transporter	-
RW078_RS16890 (RW078_16890)	rlmB	3590480..3591229 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RW078_RS16895 (RW078_16895)	-	3591331..3591657 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RW078_RS16900 (RW078_16900)	-	3591734..3593044 (-)	1311	WP_049081383.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32078.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=889436 RW078_RS16875 WP_001152274.1 3588075..3588935(+) (pilD) [Acinetobacter baumannii strain ABO21-A045]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=889436 RW078_RS16875 WP_001152274.1 3588075..3588935(+) (pilD) [Acinetobacter baumannii strain ABO21-A045]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434