Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RW078_RS10160 Genome accession   NZ_CP136178
Coordinates   2145949..2146329 (-) Length   126 a.a.
NCBI ID   WP_038348264.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140949..2151329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS10130 (RW078_10130) tadA 2141068..2141571 (-) 504 WP_031954106.1 tRNA adenosine(34) deaminase TadA -
  RW078_RS10135 (RW078_10135) - 2141578..2142702 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  RW078_RS10140 (RW078_10140) ung 2142699..2143412 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  RW078_RS10145 (RW078_10145) - 2143463..2144059 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  RW078_RS10150 (RW078_10150) gspK 2144289..2145248 (-) 960 WP_317858585.1 type II secretion system minor pseudopilin GspK -
  RW078_RS10155 (RW078_10155) xcpW 2145248..2145949 (-) 702 WP_086263569.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RW078_RS10160 (RW078_10160) xcpV 2145949..2146329 (-) 381 WP_038348264.1 type II secretion system minor pseudopilin GspI Machinery gene
  RW078_RS10165 (RW078_10165) - 2146319..2146873 (-) 555 WP_000841373.1 type II secretion system protein -
  RW078_RS10170 (RW078_10170) - 2146883..2147491 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RW078_RS10175 (RW078_10175) - 2147529..2148302 (-) 774 WP_000497295.1 TatD family hydrolase -
  RW078_RS10180 (RW078_10180) - 2148320..2148661 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  RW078_RS10185 (RW078_10185) - 2148673..2149653 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RW078_RS10190 (RW078_10190) kdsB 2149665..2150426 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13961.18 Da        Isoelectric Point: 9.8004

>NTDB_id=889421 RW078_RS10160 WP_038348264.1 2145949..2146329(-) (xcpV) [Acinetobacter baumannii strain ABO21-A045]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEVNQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=889421 RW078_RS10160 WP_038348264.1 2145949..2146329(-) (xcpV) [Acinetobacter baumannii strain ABO21-A045]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGGTTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992