Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RW078_RS02180 Genome accession   NZ_CP136178
Coordinates   460049..460684 (-) Length   211 a.a.
NCBI ID   WP_075399905.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455049..465684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS02145 (RW078_02145) mlaE 455382..456161 (+) 780 WP_001091947.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RW078_RS02150 (RW078_02150) - 456161..456841 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RW078_RS02155 (RW078_02155) - 456868..457509 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RW078_RS02160 (RW078_02160) - 457521..457808 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RW078_RS02165 (RW078_02165) - 457878..458891 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RW078_RS02170 (RW078_02170) - 459049..459630 (+) 582 WP_317859005.1 TIGR00730 family Rossman fold protein -
  RW078_RS02175 (RW078_02175) - 459645..460046 (+) 402 WP_000849701.1 NUDIX hydrolase -
  RW078_RS02180 (RW078_02180) comF 460049..460684 (-) 636 WP_075399905.1 ComF family protein Machinery gene
  RW078_RS02185 (RW078_02185) recG 460677..462722 (-) 2046 WP_272302490.1 ATP-dependent DNA helicase RecG -
  RW078_RS02190 (RW078_02190) - 462743..463558 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  RW078_RS02195 (RW078_02195) adeT2 463638..464624 (+) 987 WP_272322438.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24571.74 Da        Isoelectric Point: 9.7140

>NTDB_id=889412 RW078_RS02180 WP_075399905.1 460049..460684(-) (comF) [Acinetobacter baumannii strain ABO21-A045]
MFKFLTPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=889412 RW078_RS02180 WP_075399905.1 460049..460684(-) (comF) [Acinetobacter baumannii strain ABO21-A045]
ATGTTTAAGTTTTTAACCCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976