Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RW078_RS01840 Genome accession   NZ_CP136178
Coordinates   390323..390745 (+) Length   140 a.a.
NCBI ID   WP_024433097.1    Uniprot ID   A0AAP1W5M5
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385323..395745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS01825 (RW078_01825) - 385445..386134 (+) 690 WP_162282676.1 pilus assembly protein PilX -
  RW078_RS01830 (RW078_01830) - 386160..389750 (+) 3591 WP_317858994.1 pilus assembly protein -
  RW078_RS01835 (RW078_01835) - 389760..390323 (+) 564 WP_024436448.1 type IV pilin protein -
  RW078_RS01840 (RW078_01840) comF 390323..390745 (+) 423 WP_024433097.1 type IV pilin protein Machinery gene
  RW078_RS01845 (RW078_01845) rpsP 390893..391144 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RW078_RS01850 (RW078_01850) rimM 391164..391712 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RW078_RS01855 (RW078_01855) trmD 391758..392498 (+) 741 WP_317858995.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RW078_RS01860 (RW078_01860) rplS 392706..393074 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RW078_RS01865 (RW078_01865) - 393126..394067 (-) 942 WP_085941363.1 lipase family alpha/beta hydrolase -
  RW078_RS01870 (RW078_01870) - 394182..395213 (-) 1032 WP_005130744.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15517.59 Da        Isoelectric Point: 9.2459

>NTDB_id=889411 RW078_RS01840 WP_024433097.1 390323..390745(+) (comF) [Acinetobacter baumannii strain ABO21-A045]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=889411 RW078_RS01840 WP_024433097.1 390323..390745(+) (comF) [Acinetobacter baumannii strain ABO21-A045]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.167

100

0.557
  pilE Acinetobacter baumannii D1279779

52.941

97.143

0.514
  pilA2 Legionella pneumophila str. Paris

39.416

97.857

0.386
  pilA2 Legionella pneumophila strain ERS1305867

39.416

97.857

0.386