Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU46_RS15275 Genome accession   NZ_AP024867
Coordinates   319266..320357 (-) Length   363 a.a.
NCBI ID   WP_141271917.1    Uniprot ID   A0A4Y3IRP3
Organism   Vibrio comitans strain LMG 23416     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 314266..325357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS15260 - 314926..315753 (+) 828 WP_141271920.1 SDR family oxidoreductase -
  OCU46_RS15265 - 315788..316747 (-) 960 WP_141271919.1 hypothetical protein -
  OCU46_RS15270 - 316747..319260 (-) 2514 WP_371858844.1 LuxQ periplasmic sensor domain-containing protein -
  OCU46_RS15275 luxP 319266..320357 (-) 1092 WP_141271917.1 substrate-binding domain-containing protein Regulator
  OCU46_RS15280 - 320354..320629 (-) 276 WP_141271916.1 GIY-YIG nuclease family protein -
  OCU46_RS15285 - 320641..321294 (-) 654 WP_141271915.1 YceH family protein -
  OCU46_RS15290 - 321503..321817 (+) 315 WP_141271914.1 DUF496 family protein -
  OCU46_RS15295 - 321979..323748 (+) 1770 WP_141271913.1 sensor histidine kinase -
  OCU46_RS15300 - 323751..325088 (+) 1338 WP_141271912.1 sigma-54-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 41804.42 Da        Isoelectric Point: 5.0718

>NTDB_id=88941 OCU46_RS15275 WP_141271917.1 319266..320357(-) (luxP) [Vibrio comitans strain LMG 23416]
MRWLLVSALLATTHCFADNMILREYWEYDLFLEEYPVQRQLTQDMQSRIYQAPVPLNIEQKRPVKIDIVYPGSQLSDYWW
RNIRAIEIRLQELGIEFELNKYSSRPNLDYRQESESLQQAISNDSDYLIFTLDTSRHRKFAESVLSKNQTKLILLNITTP
IKAWERKQPLMYVGFDHVRGTELLAKEYKKAFPDSADYGLVYFSPGYISEARGDTFIKFLKDSGDYSLKRAYFTKANRET
GYQATLSMLKQEPNLDFIYASSTDLAFGVTDALSDLGREDIAVNGWGGGSEIAAIQAGLLDFTVVRMNDDTGLAIAEAIK
LDLQNEPVPQVYSGKFEVLTKYDDVKRADALKLKAFRYSDRKE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=88941 OCU46_RS15275 WP_141271917.1 319266..320357(-) (luxP) [Vibrio comitans strain LMG 23416]
ATGAGGTGGCTGCTAGTGAGTGCACTGCTGGCTACTACGCACTGCTTTGCGGATAACATGATATTACGTGAGTACTGGGA
GTATGACCTGTTCTTAGAGGAATATCCGGTGCAGCGACAGCTGACCCAAGATATGCAATCTAGAATCTATCAAGCACCAG
TGCCACTCAATATCGAACAAAAAAGACCTGTTAAGATTGATATTGTCTATCCTGGCTCCCAACTTTCAGACTATTGGTGG
AGAAACATTAGGGCGATAGAGATTAGATTGCAGGAGCTGGGAATTGAGTTTGAACTTAACAAATATTCTTCGCGCCCCAA
TCTTGATTATCGTCAAGAAAGTGAAAGCCTCCAGCAAGCCATTAGTAATGATTCTGATTATCTAATATTCACGTTAGACA
CCAGTCGTCATAGGAAATTTGCTGAGAGTGTTCTTAGTAAAAACCAAACCAAGCTGATCCTCCTTAATATCACCACACCT
ATTAAAGCTTGGGAAAGAAAGCAGCCTTTAATGTATGTGGGCTTTGATCATGTGCGTGGTACAGAGTTGTTAGCAAAGGA
GTACAAGAAGGCTTTTCCTGATTCAGCCGATTACGGCTTAGTGTATTTCTCTCCTGGCTACATTAGTGAGGCTCGCGGCG
ATACCTTTATAAAGTTTTTGAAGGACAGTGGAGACTATTCGTTAAAACGTGCTTACTTTACCAAAGCAAATCGAGAAACC
GGTTATCAAGCGACGTTATCAATGCTCAAGCAAGAACCAAATCTCGACTTTATTTACGCTTCTTCGACGGATCTAGCCTT
TGGCGTGACTGATGCTTTGTCTGATTTAGGTAGAGAAGATATCGCTGTAAACGGTTGGGGAGGGGGCTCAGAAATCGCGG
CTATTCAGGCTGGATTACTGGATTTTACGGTTGTGAGGATGAATGATGACACGGGTCTAGCGATTGCTGAGGCTATCAAG
CTTGATCTACAGAACGAGCCTGTTCCTCAAGTGTACTCTGGGAAGTTTGAGGTCCTTACCAAATACGATGATGTCAAGCG
GGCTGATGCTTTGAAACTTAAAGCCTTCCGGTATTCGGACAGAAAAGAATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(77-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IRP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

53.76

98.898

0.532

Multiple sequence alignment