Detailed information NTG0889394

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RWV42_RS16865
• Genome accession: NZ_CP136173
• Coordinates: 3569166..3570026 (+)
• Length: 286 a.a.
• NCBI ID: WP_114189686.1
• Uniprot ID: A0A335F351
• Organism: Acinetobacter baumannii strain ABO21-A049
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3564166..3575026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RWV42_RS16845 (RWV42_16845)	secG	3564771..3565100 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RWV42_RS16850 (RWV42_16850)	tpiA	3565113..3565907 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
RWV42_RS16855 (RWV42_16855)	pilB	3566198..3567910 (+)	1713	WP_001274985.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RWV42_RS16860 (RWV42_16860)	pilC	3567940..3569166 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
RWV42_RS16865 (RWV42_16865)	pilD	3569166..3570026 (+)	861	WP_114189686.1	A24 family peptidase	Machinery gene
RWV42_RS16870 (RWV42_16870)	coaE	3570028..3570624 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
RWV42_RS16875 (RWV42_16875)	-	3570621..3571535 (-)	915	WP_000075014.1	DMT family transporter	-
RWV42_RS16880 (RWV42_16880)	rlmB	3571571..3572320 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RWV42_RS16885 (RWV42_16885)	-	3572422..3572748 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RWV42_RS16890 (RWV42_16890)	-	3572825..3574135 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32074.48 Da
• Isoelectric Point: 7.1041

>NTDB_id=889394 RWV42_RS16865 WP_114189686.1 3569166..3570026(+) (pilD) [Acinetobacter baumannii strain ABO21-A049]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMIFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=889394 RWV42_RS16865 WP_114189686.1 3569166..3570026(+) (pilD) [Acinetobacter baumannii strain ABO21-A049]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGATATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACTCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGTAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A335F351

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437