Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RWV42_RS01435 Genome accession   NZ_CP136173
Coordinates   306177..306704 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301177..311704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS01420 (RWV42_01420) pilM 303730..304788 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RWV42_RS01425 (RWV42_01425) pilN 304788..305429 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RWV42_RS01430 (RWV42_01430) pilO 305426..306166 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RWV42_RS01435 (RWV42_01435) pilP 306177..306704 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RWV42_RS01440 (RWV42_01440) pilQ 306767..308932 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RWV42_RS01445 (RWV42_01445) aroK 308944..309513 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RWV42_RS01450 (RWV42_01450) aroB 309542..310624 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  RWV42_RS01455 (RWV42_01455) - 310640..311515 (+) 876 WP_114189563.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=889361 RWV42_RS01435 WP_000695065.1 306177..306704(+) (pilP) [Acinetobacter baumannii strain ABO21-A049]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=889361 RWV42_RS01435 WP_000695065.1 306177..306704(+) (pilP) [Acinetobacter baumannii strain ABO21-A049]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCTTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714