Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU46_RS12970 Genome accession   NZ_AP024866
Coordinates   2815585..2816589 (+) Length   334 a.a.
NCBI ID   WP_141271777.1    Uniprot ID   A0A4Y3IQJ2
Organism   Vibrio comitans strain LMG 23416     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810585..2821589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS12950 metJ 2810831..2811148 (+) 318 WP_141271780.1 met regulon transcriptional regulator MetJ -
  OCU46_RS12955 - 2811244..2812506 (-) 1263 WP_141271779.1 malic enzyme-like NAD(P)-binding protein -
  OCU46_RS12960 rpmE 2812674..2812892 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCU46_RS12965 priA 2813192..2815393 (+) 2202 WP_141271778.1 primosomal protein N' -
  OCU46_RS12970 cytR 2815585..2816589 (+) 1005 WP_141271777.1 DNA-binding transcriptional regulator CytR Regulator
  OCU46_RS12975 - 2816656..2817204 (+) 549 WP_141271776.1 SPOR domain-containing protein -
  OCU46_RS12980 hslV 2817351..2817875 (+) 525 WP_141271775.1 ATP-dependent protease subunit HslV -
  OCU46_RS12985 hslU 2817885..2819219 (+) 1335 WP_141271774.1 HslU--HslV peptidase ATPase subunit -
  OCU46_RS12990 - 2819317..2820483 (-) 1167 WP_141271773.1 nucleotide sugar dehydrogenase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36445.48 Da        Isoelectric Point: 4.8595

>NTDB_id=88936 OCU46_RS12970 WP_141271777.1 2815585..2816589(+) (cytR) [Vibrio comitans strain LMG 23416]
MATMKDVAELAGVSTATVSRALMNPEKVSSSTRKRVEEAVIESGYCPSAMMRSMKRNESRTLVVIVPDLCDPYFSEIIRG
IEAAASEQGYLVLHGDSSQQKCRDNSLVNLIYSKQADGLILLGTDLPIDASKSEQRNLPPMVMACEYAPELELPTVHIDN
LTASFQAVNYLAKLGHKRIGEIRGPDNAPLSSFRSQGFQQALRRAGLSIDLTNSASGDFSFESGALALRKLMSAGSPPSA
VFCHNDMMAIGAIKEAKNMGLRVPQDISFIGFDNIEFSEYCDPPLTTVSQPRYDIGYQATQMLFELLNGNEISSGSRLLD
TELVVRESTLPPSY

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=88936 OCU46_RS12970 WP_141271777.1 2815585..2816589(+) (cytR) [Vibrio comitans strain LMG 23416]
ATGGCGACCATGAAGGATGTTGCTGAACTCGCTGGCGTTTCCACTGCGACAGTATCAAGAGCGTTAATGAACCCAGAAAA
GGTTTCTTCCTCCACTCGCAAACGAGTAGAAGAGGCGGTTATCGAATCGGGTTACTGCCCAAGCGCCATGATGCGTAGCA
TGAAGCGTAACGAATCAAGAACCCTTGTAGTAATAGTACCTGATCTCTGTGACCCCTACTTTTCAGAAATCATTCGTGGC
ATCGAAGCAGCCGCCTCAGAACAAGGTTACTTAGTACTTCACGGCGACAGCTCACAGCAAAAATGCCGAGATAACTCCCT
AGTCAATCTTATCTACTCTAAACAAGCCGATGGCCTGATTCTACTGGGTACCGATTTACCTATCGATGCCAGCAAATCAG
AACAGCGAAATCTTCCACCTATGGTGATGGCTTGTGAATACGCGCCAGAGCTAGAACTGCCAACCGTGCATATCGATAAC
CTTACGGCTTCTTTCCAAGCTGTAAACTATCTCGCCAAGCTTGGGCATAAGCGCATCGGGGAGATTCGTGGACCAGATAA
TGCGCCGCTATCTAGCTTTCGAAGCCAAGGCTTTCAGCAAGCGTTGCGACGCGCAGGCCTCAGCATCGACTTGACCAATT
CAGCTAGTGGTGATTTTAGTTTTGAATCTGGGGCATTAGCACTGCGTAAGCTAATGAGCGCGGGCTCTCCACCAAGCGCT
GTTTTTTGTCACAACGATATGATGGCGATTGGCGCAATCAAAGAAGCCAAAAATATGGGGCTTAGAGTTCCACAAGACAT
TTCATTTATCGGATTCGACAATATCGAGTTCTCTGAATACTGCGATCCTCCACTGACCACTGTCTCCCAGCCTCGTTACG
ATATCGGTTATCAAGCTACGCAAATGCTGTTCGAACTTCTGAATGGCAATGAGATTAGTTCAGGCTCACGACTTCTGGAT
ACAGAACTTGTGGTAAGAGAAAGTACCTTACCGCCTAGTTATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IQJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

70.571

99.701

0.704
  cytR Vibrio parahaemolyticus RIMD 2210633

70.482

99.401

0.701

Multiple sequence alignment