Detailed information NTG0889347

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RWU60_RS16700
• Genome accession: NZ_CP136172
• Coordinates: 3586871..3587731 (+)
• Length: 286 a.a.
• NCBI ID: WP_317856925.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain ABO21-A051
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3581871..3592731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RWU60_RS16680 (RWU60_16680)	secG	3582476..3582805 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RWU60_RS16685 (RWU60_16685)	tpiA	3582818..3583612 (-)	795	WP_272406718.1	triose-phosphate isomerase	-
RWU60_RS16690 (RWU60_16690)	pilB	3583903..3585615 (+)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RWU60_RS16695 (RWU60_16695)	pilC	3585645..3586871 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
RWU60_RS16700 (RWU60_16700)	pilD	3586871..3587731 (+)	861	WP_317856925.1	A24 family peptidase	Machinery gene
RWU60_RS16705 (RWU60_16705)	coaE	3587733..3588329 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RWU60_RS16710 (RWU60_16710)	-	3588326..3589240 (-)	915	WP_000075014.1	DMT family transporter	-
RWU60_RS16715 (RWU60_16715)	rlmB	3589276..3590025 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RWU60_RS16720 (RWU60_16720)	-	3590127..3590453 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RWU60_RS16725 (RWU60_16725)	-	3590530..3591840 (-)	1311	WP_317856926.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32022.43 Da
• Isoelectric Point: 7.1041

>NTDB_id=889347 RWU60_RS16700 WP_317856925.1 3586871..3587731(+) (pilD) [Acinetobacter baumannii strain ABO21-A051]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTAPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=889347 RWU60_RS16700 WP_317856925.1 3586871..3587731(+) (pilD) [Acinetobacter baumannii strain ABO21-A051]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCGCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.846	95.455	0.514
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441