Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RWU60_RS10380 Genome accession   NZ_CP136172
Coordinates   2223306..2223686 (-) Length   126 a.a.
NCBI ID   WP_317856675.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218306..2228686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS10350 (RWU60_10350) tadA 2218425..2218928 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  RWU60_RS10355 (RWU60_10355) - 2218935..2220059 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  RWU60_RS10360 (RWU60_10360) ung 2220056..2220769 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  RWU60_RS10365 (RWU60_10365) - 2220820..2221416 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  RWU60_RS10370 (RWU60_10370) gspK 2221646..2222605 (-) 960 WP_000301463.1 type II secretion system minor pseudopilin GspK -
  RWU60_RS10375 (RWU60_10375) xcpW 2222605..2223306 (-) 702 WP_000594585.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RWU60_RS10380 (RWU60_10380) xcpV 2223306..2223686 (-) 381 WP_317856675.1 type II secretion system minor pseudopilin GspI Machinery gene
  RWU60_RS10385 (RWU60_10385) - 2223676..2224230 (-) 555 WP_317856676.1 type II secretion system protein -
  RWU60_RS10390 (RWU60_10390) - 2224240..2224848 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RWU60_RS10395 (RWU60_10395) - 2224886..2225659 (-) 774 WP_000497298.1 TatD family hydrolase -
  RWU60_RS10400 (RWU60_10400) - 2225677..2226018 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  RWU60_RS10405 (RWU60_10405) - 2226030..2227010 (-) 981 WP_317856677.1 DNA polymerase III subunit delta' -
  RWU60_RS10410 (RWU60_10410) kdsB 2227022..2227783 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13953.15 Da        Isoelectric Point: 9.4458

>NTDB_id=889332 RWU60_RS10380 WP_317856675.1 2223306..2223686(-) (xcpV) [Acinetobacter baumannii strain ABO21-A051]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITDMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=889332 RWU60_RS10380 WP_317856675.1 2223306..2223686(-) (xcpV) [Acinetobacter baumannii strain ABO21-A051]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTGATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992