Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RWU60_RS02020 Genome accession   NZ_CP136172
Coordinates   426492..427127 (-) Length   211 a.a.
NCBI ID   WP_317857054.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421492..432127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01985 (RWU60_01985) mlaE 421826..422605 (+) 780 WP_001091947.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RWU60_RS01990 (RWU60_01990) - 422605..423285 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RWU60_RS01995 (RWU60_01995) - 423312..423953 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RWU60_RS02000 (RWU60_02000) - 423965..424252 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RWU60_RS02005 (RWU60_02005) - 424321..425334 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RWU60_RS02010 (RWU60_02010) - 425492..426073 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  RWU60_RS02015 (RWU60_02015) - 426088..426489 (+) 402 WP_000849701.1 NUDIX hydrolase -
  RWU60_RS02020 (RWU60_02020) comF 426492..427127 (-) 636 WP_317857054.1 ComF family protein Machinery gene
  RWU60_RS02025 (RWU60_02025) recG 427120..429165 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  RWU60_RS02030 (RWU60_02030) - 429186..430001 (+) 816 WP_317857055.1 NAD-dependent epimerase/dehydratase family protein -
  RWU60_RS02035 (RWU60_02035) adeT2 430081..431067 (+) 987 WP_317857056.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24630.81 Da        Isoelectric Point: 9.7140

>NTDB_id=889323 RWU60_RS02020 WP_317857054.1 426492..427127(-) (comF) [Acinetobacter baumannii strain ABO21-A051]
MFKFLNPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAF
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSISY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=889323 RWU60_RS02020 WP_317857054.1 426492..427127(-) (comF) [Acinetobacter baumannii strain ABO21-A051]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGTTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTATATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.104

100

0.981
  comF Acinetobacter baumannii D1279779

97.156

100

0.972