Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RWU60_RS01525 Genome accession   NZ_CP136172
Coordinates   322596..323123 (+) Length   175 a.a.
NCBI ID   WP_317857349.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317596..328123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01510 (RWU60_01510) pilM 320149..321207 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RWU60_RS01515 (RWU60_01515) pilN 321207..321848 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  RWU60_RS01520 (RWU60_01520) pilO 321845..322585 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RWU60_RS01525 (RWU60_01525) pilP 322596..323123 (+) 528 WP_317857349.1 pilus assembly protein PilP Machinery gene
  RWU60_RS01530 (RWU60_01530) pilQ 323186..325351 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  RWU60_RS01535 (RWU60_01535) aroK 325363..325932 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RWU60_RS01540 (RWU60_01540) aroB 325961..327043 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  RWU60_RS01545 (RWU60_01545) - 327059..327934 (+) 876 WP_000218810.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19405.61 Da        Isoelectric Point: 8.4625

>NTDB_id=889314 RWU60_RS01525 WP_317857349.1 322596..323123(+) (pilP) [Acinetobacter baumannii strain ABO21-A051]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKQ
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=889314 RWU60_RS01525 WP_317857349.1 322596..323123(+) (pilP) [Acinetobacter baumannii strain ABO21-A051]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACAG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703