Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RWU60_RS01515 Genome accession   NZ_CP136172
Coordinates   321207..321848 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316207..326848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01495 (RWU60_01495) - 316255..316587 (+) 333 WP_000169603.1 hypothetical protein -
  RWU60_RS01500 (RWU60_01500) - 316590..317414 (+) 825 WP_086262784.1 putative RNA methyltransferase -
  RWU60_RS01505 (RWU60_01505) ponA 317432..319987 (-) 2556 WP_031380007.1 penicillin-binding protein PBP1a -
  RWU60_RS01510 (RWU60_01510) pilM 320149..321207 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RWU60_RS01515 (RWU60_01515) pilN 321207..321848 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  RWU60_RS01520 (RWU60_01520) pilO 321845..322585 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RWU60_RS01525 (RWU60_01525) pilP 322596..323123 (+) 528 WP_317857349.1 pilus assembly protein PilP Machinery gene
  RWU60_RS01530 (RWU60_01530) pilQ 323186..325351 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  RWU60_RS01535 (RWU60_01535) aroK 325363..325932 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=889312 RWU60_RS01515 WP_000201226.1 321207..321848(+) (pilN) [Acinetobacter baumannii strain ABO21-A051]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=889312 RWU60_RS01515 WP_000201226.1 321207..321848(+) (pilN) [Acinetobacter baumannii strain ABO21-A051]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709