Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU46_RS09695 Genome accession   NZ_AP024866
Coordinates   2115324..2116727 (-) Length   467 a.a.
NCBI ID   WP_141273447.1    Uniprot ID   -
Organism   Vibrio comitans strain LMG 23416     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2110324..2121727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS09660 moaE 2111018..2111467 (-) 450 WP_141273459.1 molybdopterin synthase catalytic subunit MoaE -
  OCU46_RS09665 moaD 2111469..2111714 (-) 246 WP_141273457.1 molybdopterin synthase sulfur carrier subunit -
  OCU46_RS09670 moaC 2111711..2112190 (-) 480 WP_141273455.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU46_RS09675 moaB 2112197..2112709 (-) 513 WP_119010034.1 molybdenum cofactor biosynthesis protein B -
  OCU46_RS09680 moaA 2112761..2113750 (-) 990 WP_141273453.1 GTP 3',8-cyclase MoaA -
  OCU46_RS09685 yvcK 2114080..2114964 (+) 885 WP_141273451.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU46_RS09690 - 2114972..2115331 (-) 360 WP_141273449.1 Hpt domain-containing protein -
  OCU46_RS09695 luxO 2115324..2116727 (-) 1404 WP_141273447.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU46_RS09700 uvrB 2116747..2118792 (-) 2046 WP_141273445.1 excinuclease ABC subunit UvrB -
  OCU46_RS09710 - 2119372..2119686 (+) 315 WP_141273443.1 hypothetical protein -
  OCU46_RS09715 rsxA 2120080..2120661 (+) 582 WP_141273441.1 electron transport complex subunit RsxA -
  OCU46_RS09720 rsxB 2120661..2121248 (+) 588 WP_141273439.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51896.47 Da        Isoelectric Point: 5.5423

>NTDB_id=88930 OCU46_RS09695 WP_141273447.1 2115324..2116727(-) (luxO) [Vibrio comitans strain LMG 23416]
MSKNKIANKQLRLLMVEDTLSVATLYQTYLSTLNLDIQIVSSGEAALEHLEQQPIDLMLLDLRLPDMTGMDVLKKVRARA
PKVPVIFMTAHGSIEVAVEAMRAGAHDFLIKPCEADQLRITVSKAIHQTQNGKHDVLGEINQYQGFIGSSASMQKVYKTI
DSAASSKASIFITGESGTGKEVCAEAIHSVSNRSTEPFIALNCAAIPKDLIESELFGHVKGAFTGAATDRKGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTYQKVGSSKLSAVDVRFVCATNKDPWQEVKRGRFREDLYYRLYVIPLHLPPLRDR
GDDIVEIAYSLLGFTSLEENKQFGKFNEEVLRHFVAYPWPGNVRQLQNVIRNIVVLNEGEEVKMDMLPSPLDRFKVASYS
EEAIDQFIDPEQSDDSKKIVPLAVVERRTIERAIELCGGSIPAAATELDVSASTLYRKLEKWEKGRG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=88930 OCU46_RS09695 WP_141273447.1 2115324..2116727(-) (luxO) [Vibrio comitans strain LMG 23416]
ATGTCAAAAAATAAAATAGCAAACAAGCAGTTGAGATTGTTGATGGTAGAGGACACGCTTTCAGTAGCGACCTTATATCA
GACTTATCTATCAACATTGAATTTAGATATTCAAATAGTCTCTAGTGGTGAGGCTGCATTAGAGCACCTAGAGCAGCAGC
CGATTGATCTTATGTTGCTGGATCTGCGCCTGCCTGATATGACAGGGATGGACGTATTGAAAAAGGTGCGAGCTAGAGCG
CCTAAAGTTCCCGTTATCTTTATGACTGCACATGGCTCAATTGAGGTTGCAGTTGAGGCGATGAGAGCCGGTGCTCATGA
TTTTTTGATTAAGCCATGTGAAGCGGATCAGCTCCGCATCACAGTATCTAAAGCGATACACCAAACTCAAAATGGCAAGC
ATGATGTTCTAGGAGAGATAAACCAATATCAAGGCTTTATTGGCTCTAGTGCTAGCATGCAAAAGGTTTATAAAACCATA
GACTCGGCGGCATCCAGTAAAGCCAGTATCTTTATTACTGGCGAAAGTGGAACGGGCAAAGAGGTCTGTGCTGAGGCTAT
ACATTCTGTCAGTAATCGAAGCACGGAACCCTTTATCGCATTGAACTGTGCGGCTATTCCTAAAGATCTTATTGAAAGTG
AATTGTTTGGCCACGTAAAAGGTGCATTTACAGGGGCGGCAACGGATCGAAAAGGGGCTGCAGAGTTAGCTGACGGCGGT
ACTCTATTTCTAGACGAATTATGCGAAATGGATTTGGACTTACAGACCAAATTACTGCGCTTTATTCAGACCGGTACATA
CCAAAAGGTAGGCTCATCAAAGCTCAGTGCGGTTGATGTACGCTTTGTCTGTGCGACTAACAAAGATCCATGGCAAGAGG
TAAAGAGAGGGCGTTTTCGTGAGGACCTGTATTACCGCCTCTACGTTATCCCGTTGCATCTGCCACCGCTGAGAGATCGA
GGTGATGACATTGTTGAAATTGCGTACTCTTTACTCGGTTTTACCTCCCTTGAAGAGAACAAGCAGTTTGGCAAATTTAA
CGAAGAGGTACTTCGTCACTTCGTTGCTTATCCGTGGCCGGGTAATGTGCGTCAGCTACAAAATGTGATTCGCAATATTG
TGGTTCTCAATGAAGGGGAAGAGGTGAAAATGGACATGTTGCCTTCTCCCTTAGACCGATTCAAAGTCGCATCATATTCA
GAAGAGGCTATTGATCAGTTTATAGACCCTGAGCAAAGTGACGATAGTAAAAAGATAGTGCCGTTGGCTGTAGTGGAACG
AAGAACCATAGAACGAGCCATCGAGCTGTGCGGTGGTAGCATACCTGCAGCCGCCACTGAACTGGATGTCAGTGCATCAA
CACTCTACAGAAAACTAGAAAAATGGGAGAAAGGGCGTGGATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-120)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

68.304

95.931

0.655
  pilR Pseudomonas aeruginosa PAK

37.611

96.788

0.364

Multiple sequence alignment