Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCU46_RS07345 Genome accession   NZ_AP024866
Coordinates   1618438..1619853 (+) Length   471 a.a.
NCBI ID   WP_141271408.1    Uniprot ID   A0A4Y3IPL3
Organism   Vibrio comitans strain LMG 23416     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613438..1624853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS07325 - 1614323..1615357 (-) 1035 WP_141271405.1 succinylglutamate desuccinylase -
  OCU46_RS07330 - 1615455..1616114 (+) 660 WP_141271406.1 NAD(P)H-binding protein -
  OCU46_RS07335 - 1616271..1617641 (+) 1371 WP_141271407.1 L-cystine transporter -
  OCU46_RS07340 - 1617778..1618155 (+) 378 WP_141271482.1 nuclear transport factor 2 family protein -
  OCU46_RS07345 sbcB 1618438..1619853 (+) 1416 WP_141271408.1 exodeoxyribonuclease I Machinery gene
  OCU46_RS07350 - 1619857..1620219 (+) 363 WP_141271409.1 CidA/LrgA family protein -
  OCU46_RS07355 - 1620221..1620898 (+) 678 WP_141271410.1 CidB/LrgB family autolysis modulator -
  OCU46_RS07360 cdd 1621046..1621939 (+) 894 WP_141271411.1 cytidine deaminase -
  OCU46_RS07365 purT 1622090..1623265 (+) 1176 WP_141271412.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCU46_RS07370 ihfA 1623371..1623673 (-) 303 WP_017027221.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 54126.73 Da        Isoelectric Point: 6.0887

>NTDB_id=88928 OCU46_RS07345 WP_141271408.1 1618438..1619853(+) (sbcB) [Vibrio comitans strain LMG 23416]
MHTDQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADLNVIGEPLVIYCRPPADYLPNPEAALVTGITPQKAMKEGLSEPE
FITAIHNEMSRPNTCTLGYNSVRFDDEVTRYTCYRNFIEPYEWSYKNGNSRWDLLDVMRACHALRPEGINWPENDEGNTS
FRLEHLSVANGIEHSNAHDAMADVYATIEMAKKVKQSQPKLFDFFYKHRGKQKLNALVDIVNMTPLVHVSGMLSTEHQKT
ALIAPIGWTPIKALITIDLTQDITPLIELSADEIKQRLYTKRSDLEEGQLPIPVKLVHLNKCPILAPLGVLTTEAIERTQ
IDKEQCLQRQQLLQQHPQIREKLDAVFAENRAFPASPNIEEQLYNGFFSPADKAQMRIIREAKPEVLGSLDIQVTDPRIA
PLLFNYRARNFFHTLTDQEQKRWLLHCRDKFEQELPNYLLNLENLGAQHQGDEHKMKILKAIYHYVEQLVS

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=88928 OCU46_RS07345 WP_141271408.1 1618438..1619853(+) (sbcB) [Vibrio comitans strain LMG 23416]
ATGCACACGGACCAACCCACATTCTTTTTCTTTGATTACGAGACTTGGGGAGTCAGTCCGGCAAAAGATAGACCGTGTCA
GTTTGCTGGTGTGCGCACCGATGCCGATCTCAATGTCATTGGTGAGCCGCTCGTCATCTATTGCAGACCGCCTGCAGATT
ATCTGCCCAATCCCGAAGCCGCACTTGTGACTGGCATTACGCCACAAAAAGCCATGAAAGAAGGCCTATCAGAGCCAGAA
TTCATCACTGCCATTCACAACGAAATGAGTCGTCCAAATACCTGCACCCTTGGGTACAACAGCGTACGCTTCGACGATGA
GGTTACTCGATATACCTGCTATCGTAATTTCATAGAACCTTATGAGTGGAGTTACAAAAACGGAAATTCTAGATGGGATC
TATTAGATGTTATGCGCGCCTGTCATGCTCTGCGACCAGAAGGGATAAACTGGCCAGAAAACGACGAAGGAAATACCAGT
TTTCGATTAGAGCATTTATCGGTAGCAAACGGTATTGAGCACAGCAACGCCCACGATGCGATGGCCGATGTGTATGCCAC
TATTGAGATGGCCAAAAAGGTGAAACAGAGCCAACCTAAGCTATTTGATTTCTTCTATAAACACAGAGGAAAACAAAAGC
TCAACGCTCTTGTCGATATTGTCAATATGACGCCGCTGGTTCACGTATCTGGAATGCTTAGCACTGAGCATCAAAAAACC
GCGTTGATTGCGCCTATAGGTTGGACGCCAATTAAAGCTCTAATCACTATCGATCTTACTCAAGACATTACGCCGTTAAT
TGAACTTTCTGCGGACGAAATCAAACAAAGGCTCTATACCAAGCGCAGCGACCTTGAAGAGGGTCAATTGCCTATTCCAG
TAAAACTTGTCCATCTGAATAAGTGCCCTATTCTTGCTCCCCTTGGTGTATTAACGACTGAGGCTATTGAACGCACACAA
ATCGATAAAGAACAATGCTTGCAAAGGCAACAACTCCTTCAGCAACATCCACAAATTCGAGAAAAACTTGATGCCGTATT
TGCAGAGAATAGAGCGTTTCCAGCCAGCCCTAACATAGAAGAGCAGCTCTACAATGGCTTCTTCTCACCGGCAGATAAAG
CGCAGATGCGTATTATCCGTGAAGCTAAACCTGAGGTTTTAGGATCACTAGATATCCAAGTCACTGATCCTCGCATTGCG
CCTTTGCTGTTTAACTATCGAGCGCGAAACTTTTTTCACACTCTCACCGATCAAGAACAGAAACGATGGCTACTGCACTG
TCGTGATAAGTTTGAACAAGAATTACCAAATTACCTATTAAACCTAGAAAATCTTGGTGCGCAGCATCAAGGAGATGAGC
ATAAGATGAAGATCCTCAAAGCCATCTATCACTACGTTGAACAATTGGTTTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-187)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IPL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

67.094

99.363

0.667

Multiple sequence alignment