Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AAEY34_RS28610 Genome accession   NZ_CP151647
Coordinates   6152516..6153190 (-) Length   224 a.a.
NCBI ID   WP_003117160.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HN148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6147516..6158190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY34_RS28580 (AAEY34_28580) - 6147690..6149024 (+) 1335 WP_004352308.1 aspartate aminotransferase family protein -
  AAEY34_RS28585 (AAEY34_28585) - 6149090..6149452 (+) 363 WP_003096551.1 cupin domain-containing protein -
  AAEY34_RS28590 (AAEY34_28590) rpmG 6149587..6149742 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  AAEY34_RS28595 (AAEY34_28595) rpmB 6149754..6149990 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  AAEY34_RS28600 (AAEY34_28600) - 6150345..6151925 (+) 1581 WP_003117158.1 ABC transporter substrate-binding protein -
  AAEY34_RS28605 (AAEY34_28605) - 6151951..6152499 (+) 549 WP_003098290.1 hypothetical protein -
  AAEY34_RS28610 (AAEY34_28610) radC 6152516..6153190 (-) 675 WP_003117160.1 DNA repair protein RadC Machinery gene
  AAEY34_RS28615 (AAEY34_28615) coaBC 6153330..6154538 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AAEY34_RS28620 (AAEY34_28620) dut 6154546..6155001 (+) 456 WP_031757069.1 dUTP diphosphatase -
  AAEY34_RS28625 (AAEY34_28625) - 6155038..6157650 (+) 2613 WP_263475745.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24888.65 Da        Isoelectric Point: 7.2089

>NTDB_id=889233 AAEY34_RS28610 WP_003117160.1 6152516..6153190(-) (radC) [Pseudomonas aeruginosa strain HN148]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVAGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=889233 AAEY34_RS28610 WP_003117160.1 6152516..6153190(-) (radC) [Pseudomonas aeruginosa strain HN148]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGGCCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397