Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU46_RS02310 Genome accession   NZ_AP024866
Coordinates   474262..474777 (+) Length   171 a.a.
NCBI ID   WP_141269811.1    Uniprot ID   A0A4Y3IJQ5
Organism   Vibrio comitans strain LMG 23416     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 469262..479777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS02300 - 469687..472575 (+) 2889 WP_141269815.1 M16 family metallopeptidase -
  OCU46_RS02305 gshA 472674..474245 (+) 1572 WP_167495339.1 glutamate--cysteine ligase -
  OCU46_RS02310 luxS 474262..474777 (+) 516 WP_141269811.1 S-ribosylhomocysteine lyase Regulator
  OCU46_RS02315 - 474845..476107 (-) 1263 WP_141269809.1 HlyC/CorC family transporter -
  OCU46_RS02320 - 476183..476977 (-) 795 WP_141269807.1 cytochrome C assembly family protein -
  OCU46_RS02325 ffh 477128..478519 (+) 1392 WP_141269805.1 signal recognition particle protein -
  OCU46_RS02330 rpsP 478773..479021 (+) 249 WP_017027436.1 30S ribosomal protein S16 -
  OCU46_RS02335 rimM 479057..479587 (+) 531 WP_141269803.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18783.38 Da        Isoelectric Point: 4.4421

>NTDB_id=88922 OCU46_RS02310 WP_141269811.1 474262..474777(+) (luxS) [Vibrio comitans strain LMG 23416]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPSGDTITVFDLRFTQPNKDILSERGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSESDVATAWVASMEDVLKVEGQNKIPELNEYQCGTAEMHSLEEAKAIASAILEAGVSVNKNDELA
LPEEMLQTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=88922 OCU46_RS02310 WP_141269811.1 474262..474777(+) (luxS) [Vibrio comitans strain LMG 23416]
ATGCCCCTATTAGACAGTTTTACAGTTGACCACACAAAAATGAATGCACCTGCAGTGCGTGTGGCAAAAACGATGCAAAC
TCCAAGTGGCGATACTATTACAGTATTCGACCTTCGCTTTACTCAGCCAAATAAAGATATCCTTTCTGAGAGAGGGATTC
ATACACTTGAGCACCTGTACGCTGGTTTCATGCGTAACCACCTAAATGGTGATTCCGTTGAGATCATCGATATCTCCCCT
ATGGGTTGTCGTACTGGCTTTTACATGAGCCTGATTGGCACACCATCAGAATCTGATGTAGCAACGGCATGGGTTGCATC
TATGGAAGATGTGCTTAAAGTCGAGGGACAAAACAAGATCCCTGAACTGAACGAGTACCAGTGTGGTACCGCAGAAATGC
ACTCTCTAGAAGAAGCAAAAGCTATTGCTAGCGCTATTTTAGAAGCGGGTGTATCAGTGAATAAAAATGATGAGTTGGCT
CTTCCAGAAGAGATGCTACAAACACTGAAAGTGTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IJQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

100

0.842

Multiple sequence alignment