Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RWU16_RS01960 Genome accession   NZ_CP136167
Coordinates   414496..415131 (-) Length   211 a.a.
NCBI ID   WP_317856496.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409496..420131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU16_RS01925 (RWU16_01925) mlaE 409832..410608 (+) 777 WP_001091950.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RWU16_RS01930 (RWU16_01930) - 410608..411288 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RWU16_RS01935 (RWU16_01935) - 411315..411956 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RWU16_RS01940 (RWU16_01940) - 411968..412255 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RWU16_RS01945 (RWU16_01945) - 412325..413338 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RWU16_RS01950 (RWU16_01950) - 413496..414077 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  RWU16_RS01955 (RWU16_01955) - 414092..414493 (+) 402 WP_000849701.1 NUDIX hydrolase -
  RWU16_RS01960 (RWU16_01960) comF 414496..415131 (-) 636 WP_317856496.1 ComF family protein Machinery gene
  RWU16_RS01965 (RWU16_01965) recG 415124..417169 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  RWU16_RS01970 (RWU16_01970) - 417190..418005 (+) 816 WP_317856497.1 NAD-dependent epimerase/dehydratase family protein -
  RWU16_RS01975 (RWU16_01975) adeT2 418085..419071 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24561.70 Da        Isoelectric Point: 9.7140

>NTDB_id=889136 RWU16_RS01960 WP_317856496.1 414496..415131(-) (comF) [Acinetobacter baumannii strain ABO21-A061]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
PQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=889136 RWU16_RS01960 WP_317856496.1 414496..415131(-) (comF) [Acinetobacter baumannii strain ABO21-A061]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
CCTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986