Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU35_RS17800 Genome accession   NZ_AP024865
Coordinates   1076571..1077662 (-) Length   363 a.a.
NCBI ID   WP_261826116.1    Uniprot ID   -
Organism   Vibrio breoganii strain CAIM 1829     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071571..1082662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS17785 - 1072237..1073064 (+) 828 WP_017242966.1 SDR family oxidoreductase -
  OCU35_RS17790 - 1073087..1074046 (-) 960 WP_261826114.1 hypothetical protein -
  OCU35_RS17795 - 1074046..1076568 (-) 2523 WP_261826115.1 LuxQ periplasmic sensor domain-containing protein -
  OCU35_RS17800 luxP 1076571..1077662 (-) 1092 WP_261826116.1 substrate-binding domain-containing protein Regulator
  OCU35_RS17805 - 1077659..1077934 (-) 276 WP_102542332.1 GIY-YIG nuclease family protein -
  OCU35_RS17810 - 1077946..1078599 (-) 654 WP_017029876.1 YceH family protein -
  OCU35_RS17815 - 1078808..1079122 (+) 315 WP_017029875.1 DUF496 family protein -
  OCU35_RS17820 - 1079286..1081055 (+) 1770 WP_102426884.1 ATP-binding protein -
  OCU35_RS17825 - 1081058..1082395 (+) 1338 WP_017242972.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 41718.32 Da        Isoelectric Point: 4.7038

>NTDB_id=88913 OCU35_RS17800 WP_261826116.1 1076571..1077662(-) (luxP) [Vibrio breoganii strain CAIM 1829]
MKLLLIGALLSFSAFQCFADNVILREYWEYDLYLDEHPEQKKLTEEMEKRIYQAPVPLAIKQQRPVKIDIVYPGSQLSDF
WWRNIKTLELRLQELGIEYELNKYSSRPNLDYRQESESLQQVLKNNSDYLVFTLDTSRHKKFAESVMNNPNTKLILLNIT
TPIKRWGEKQPLMYVGFDHIRGTQLLANEYKKMFPDSADYGLVYFSPGYISEARGDTFVKYLKDDGEYALKRAYFTKANR
ETAYQATMSMIEQESDLDFIYASSTDIAFGVTDALSELGREDIAVNGWGGGSEIAAVQSGLLDFTVVRMNDDTGLAMAEA
IKLDLQNDPVPLVYSGEYQVFTKNDEPSLAEALKLKAFRYSNR

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=88913 OCU35_RS17800 WP_261826116.1 1076571..1077662(-) (luxP) [Vibrio breoganii strain CAIM 1829]
ATGAAGCTATTGCTGATAGGGGCGCTGCTGTCATTTTCTGCTTTTCAATGTTTTGCCGACAACGTAATACTTCGCGAGTA
TTGGGAGTATGACTTGTATTTGGACGAGCATCCTGAACAAAAAAAATTAACCGAAGAAATGGAGAAGCGTATATATCAAG
CGCCTGTTCCTTTAGCTATAAAACAGCAGCGCCCAGTTAAAATCGATATCGTTTATCCTGGTTCACAGCTATCCGACTTT
TGGTGGCGCAATATTAAGACCCTAGAACTTAGGTTGCAGGAGCTCGGTATCGAATACGAGCTGAATAAATACTCTTCGCG
TCCTAATTTGGACTACCGGCAAGAAAGTGAAAGCCTGCAACAGGTACTAAAAAACAATTCTGACTATTTGGTCTTTACTC
TTGATACAAGCAGACACAAGAAGTTTGCGGAGAGTGTAATGAACAACCCCAACACCAAATTGATTCTTCTGAATATTACA
ACTCCTATTAAGCGCTGGGGGGAGAAACAACCTCTAATGTACGTGGGCTTTGACCATATTAGAGGCACTCAATTATTAGC
TAACGAATACAAGAAAATGTTTCCTGATTCTGCGGATTACGGCTTGGTTTATTTTTCCCCCGGCTATATTAGTGAAGCTC
GAGGAGACACCTTTGTTAAGTACTTAAAAGACGATGGGGAGTATGCGTTAAAACGAGCGTACTTTACCAAAGCTAATCGG
GAGACTGCGTATCAGGCAACTATGTCGATGATTGAGCAGGAGAGCGACCTAGACTTTATCTATGCCAGCTCAACAGATAT
AGCGTTTGGTGTGACCGATGCGCTGTCTGAACTAGGTAGAGAAGACATCGCTGTCAACGGTTGGGGTGGTGGCTCAGAGA
TTGCGGCTGTGCAGAGTGGATTGCTGGATTTTACCGTAGTGAGAATGAATGATGACACGGGGCTGGCAATGGCAGAAGCC
ATCAAACTTGATCTGCAAAATGATCCGGTGCCTTTGGTGTATTCGGGAGAATATCAAGTGTTCACCAAAAATGACGAACC
CAGTCTAGCAGAAGCCTTGAAACTCAAAGCATTCCGATATTCCAATAGGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(79-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

51.934

99.725

0.518

Multiple sequence alignment