Detailed information NTG0088902

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ76_RS21920
• Genome accession: NZ_AP027673
• Coordinates: 4498406..4499431 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PSS-07
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4493406..4504431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ76_RS21895 (VEE16_41750)	-	4493557..4493880 (-)	324	WP_001323627.1	RHS element protein dsORF-f3	-
AABJ76_RS21900 (VEE16_41760)	-	4493882..4495081 (-)	1200	Protein_4272	RHS repeat-associated core domain-containing protein	-
AABJ76_RS21905	-	4495169..4495477 (-)	309	Protein_4273	DUF6531 domain-containing protein	-
AABJ76_RS21910 (VEE16_41770)	rpmE	4495637..4495849 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ76_RS21915 (VEE16_41780)	priA	4496052..4498250 (+)	2199	WP_001325632.1	primosomal protein N'	Machinery gene
AABJ76_RS21920 (VEE16_41790)	cytR	4498406..4499431 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ76_RS21925 (VEE16_41800)	ftsN	4499523..4500482 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABJ76_RS21930 (VEE16_41810)	hslV	4500575..4501105 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ76_RS21935 (VEE16_41820)	hslU	4501115..4502446 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABJ76_RS21940 (VEE16_41830)	menA	4502513..4503439 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ76_RS21945 (VEE16_41840)	rraA	4503532..4504017 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ76_RS21950 (VEE16_41850)	zapB	4504102..4504347 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=88902 AABJ76_RS21920 WP_000644904.1 4498406..4499431(+) (cytR) [Escherichia coli strain PSS-07]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=88902 AABJ76_RS21920 WP_000644904.1 4498406..4499431(+) (cytR) [Escherichia coli strain PSS-07]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628