Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU35_RS09200 Genome accession   NZ_AP024864
Coordinates   1977835..1979238 (-) Length   467 a.a.
NCBI ID   WP_017029753.1    Uniprot ID   -
Organism   Vibrio breoganii strain CAIM 1829     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1972835..1984238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS09165 moaE 1973529..1973978 (-) 450 WP_017031045.1 molybdopterin synthase catalytic subunit MoaE -
  OCU35_RS09170 moaD 1973980..1974225 (-) 246 WP_017031046.1 molybdopterin synthase sulfur carrier subunit -
  OCU35_RS09175 moaC 1974222..1974701 (-) 480 WP_017029748.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU35_RS09180 moaB 1974708..1975220 (-) 513 WP_017029749.1 molybdenum cofactor biosynthesis protein B -
  OCU35_RS09185 moaA 1975272..1976261 (-) 990 WP_261825241.1 GTP 3',8-cyclase MoaA -
  OCU35_RS09190 yvcK 1976591..1977475 (+) 885 WP_017031047.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU35_RS09195 - 1977483..1977842 (-) 360 WP_017029752.1 Hpt domain-containing protein -
  OCU35_RS09200 luxO 1977835..1979238 (-) 1404 WP_017029753.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU35_RS09205 uvrB 1979258..1981285 (-) 2028 WP_261825916.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51908.53 Da        Isoelectric Point: 5.7111

>NTDB_id=88900 OCU35_RS09200 WP_017029753.1 1977835..1979238(-) (luxO) [Vibrio breoganii strain CAIM 1829]
MSKNKIANKQLRLLMVEDTLSVATLYQTYLSTLNLDIQIVSSGEAALAHLEQQPIDLMLLDLRLPDMTGMDVLKKVRARA
PKVPVIFMTAHGSIEVAVEAMRAGAHDFLIKPCEADQLRITVSKAIHQTQNGKHDVLGEINQYQGFIGSSASMQKVYKTI
DSAASSKASIFITGESGTGKEVCAEAIHSVSNRSTEPFIALNCAAIPKDLIESELFGHVKGAFTGAATDRKGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTYQKVGSSKLSAVDVRFVCATNKDPWQEVKRGRFREDLYYRLYVIPLHLPPLRDR
GDDIVEIAYSLLGFTSLEESKQFGKFNEEVLRHFVAYPWPGNVRQLQNVIRNIVVLNEGEEVKMDMLPSPLDRFRVASYS
EEVIDQFIDPEQNDDSKKIVPLALVERRTIERAIELCGGSIPAAATELDVSASTLYRKLEKWEKGRG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=88900 OCU35_RS09200 WP_017029753.1 1977835..1979238(-) (luxO) [Vibrio breoganii strain CAIM 1829]
ATGTCAAAAAATAAAATAGCAAACAAGCAGTTAAGATTGTTGATGGTAGAGGACACGCTCTCAGTGGCGACCTTATACCA
GACCTATCTATCAACATTGAATTTGGATATTCAAATCGTTTCTAGTGGTGAGGCGGCATTAGCACATCTAGAGCAGCAGC
CCATCGATCTTATGCTGCTGGACTTACGCCTGCCTGATATGACAGGAATGGACGTACTGAAAAAGGTGCGGGCAAGAGCA
CCTAAGGTCCCGGTTATCTTCATGACAGCACATGGCTCTATCGAGGTTGCCGTTGAGGCAATGAGAGCCGGTGCTCATGA
TTTTTTGATTAAGCCATGTGAGGCGGATCAGCTCCGCATTACAGTATCTAAAGCCATACACCAAACTCAAAATGGCAAGC
ACGATGTTCTTGGCGAGATAAACCAATATCAAGGCTTTATTGGCTCTAGCGCTAGCATGCAAAAAGTCTATAAGACCATA
GACTCGGCCGCATCTAGTAAGGCGAGTATCTTTATTACTGGCGAGAGCGGAACAGGTAAAGAGGTGTGTGCTGAAGCTAT
CCACTCTGTGAGCAATCGAAGTACTGAACCCTTTATTGCGCTGAACTGTGCCGCTATTCCTAAAGACCTGATTGAAAGTG
AGCTGTTTGGTCATGTAAAAGGCGCCTTTACTGGGGCTGCAACGGATCGAAAAGGGGCAGCAGAGTTGGCTGATGGTGGC
ACCTTATTTTTGGATGAATTGTGTGAGATGGATTTGGACTTACAAACCAAGTTACTGCGCTTTATTCAGACCGGTACCTA
TCAAAAAGTCGGTTCATCAAAGCTCAGTGCAGTCGATGTGCGTTTTGTGTGTGCGACCAACAAAGACCCTTGGCAAGAAG
TGAAAAGAGGGCGTTTTCGTGAGGATCTTTATTACCGTCTTTACGTTATCCCATTGCATCTGCCACCTCTAAGAGACAGA
GGGGATGACATTGTCGAGATTGCCTACTCTTTGTTAGGTTTTACTTCCCTTGAAGAGAGTAAGCAGTTTGGCAAATTCAA
CGAAGAGGTGCTTCGTCACTTCGTTGCCTATCCTTGGCCGGGGAATGTGCGCCAGTTGCAAAATGTAATTCGTAATATTG
TGGTTCTAAACGAAGGCGAAGAGGTGAAAATGGACATGCTACCTTCACCCTTAGATAGATTCAGAGTGGCTTCCTATTCC
GAAGAGGTTATCGATCAGTTCATAGACCCTGAGCAAAATGACGACAGCAAAAAGATCGTGCCGTTGGCGTTAGTGGAGCG
CAGAACCATAGAAAGAGCCATAGAACTGTGTGGTGGCAGTATACCTGCCGCCGCTACTGAACTGGATGTCAGTGCATCAA
CACTCTACAGAAAACTAGAAAAATGGGAGAAAGGGCGTGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-120)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

68.374

96.146

0.657
  pilR Pseudomonas aeruginosa PAK

37.389

96.788

0.362

Multiple sequence alignment