Detailed information NTG0088889

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU35_RS02390
• Genome accession: NZ_AP024864
• Coordinates: 490936..491910 (+)
• Length: 324 a.a.
• NCBI ID: WP_017032790.1
• Uniprot ID: A0AAP8SX55
• Organism: Vibrio breoganii strain CAIM 1829
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 485936..496910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU35_RS02355	ftsB	486149..486424 (+)	276	WP_017027190.1	cell division protein FtsB	-
OCU35_RS02360	ispD	486447..487148 (+)	702	WP_261825586.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU35_RS02365	ispF	487145..487624 (+)	480	WP_017032794.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU35_RS02370	truD	487641..488621 (+)	981	WP_017032793.1	tRNA pseudouridine(13) synthase TruD	-
OCU35_RS02375	surE	488637..489380 (+)	744	WP_065599903.1	5'/3'-nucleotidase SurE	-
OCU35_RS02380	-	489381..490007 (+)	627	WP_017027195.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU35_RS02385	nlpD	490012..490884 (+)	873	WP_017032791.1	murein hydrolase activator NlpD	-
OCU35_RS02390	rpoS	490936..491910 (+)	975	WP_017032790.1	RNA polymerase sigma factor RpoS	Regulator
OCU35_RS02395	mutS	492035..494602 (-)	2568	WP_261825587.1	DNA mismatch repair protein MutS	-
OCU35_RS02400	pncC	494685..495179 (+)	495	WP_170875150.1	nicotinamide-nucleotide amidase	-
OCU35_RS02405	recA	495285..496310 (+)	1026	WP_017027200.1	recombinase RecA	Machinery gene
OCU35_RS02410	recX	496416..496868 (+)	453	WP_261825588.1	recombination regulator RecX	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37193.12 Da
• Isoelectric Point: 4.6103

>NTDB_id=88889 OCU35_RS02390 WP_017032790.1 490936..491910(+) (rpoS) [Vibrio breoganii strain CAIM 1829]
MSMDNTAAKVEDLTEEKVSAEVEESSIVEKVETQVKEEFDASTKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEVS
TQDDDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGLNMESLFN
FDSE

Nucleotide

• Length: 975 bp

>NTDB_id=88889 OCU35_RS02390 WP_017032790.1 490936..491910(+) (rpoS) [Vibrio breoganii strain CAIM 1829]
ATGAGTATGGATAACACTGCAGCAAAAGTGGAAGACCTAACAGAAGAAAAAGTTAGTGCGGAAGTAGAAGAAAGTAGCAT
TGTTGAAAAGGTAGAAACTCAGGTAAAAGAAGAGTTTGATGCCTCAACAAAGAATCTAGACGCAACTCAACTTTATCTAG
GCGAAATCGGCTTCTCCCCACTACTAACAGCAGAAGAAGAGGTTCTGTACGCAAGACGAGCACTTCGCGGAGACGAAGCA
GCGCGCAAGCGTATGATTGAAAGTAACTTGCGTCTGGTTGTTAAGATCTCTCGTCGTTATAGCAATCGTGGCTTAGCTCT
ATTAGACCTAATTGAAGAGGGTAACCTTGGTCTAATTCGCGCCGTAGAAAAATTCGATCCTGAACGTGGCTTCAGATTCT
CAACCTACGCAACTTGGTGGATTCGACAAACCATCGAACGTGCCTTGATGAACCAAACCCGCACAATTCGCTTGCCGATC
CACGTGGTTAAAGAGCTGAACATTTACCTGAGAACGGCTCGTGAGTTATCTCAGAAGCTTGACCATGAACCAACAGCCGA
AGAGATTGCTCAGCAACTGGATAAGCCAGTAGATGATGTCAGCAAAATGCTACGCCTTAATGAGCGTGTGAGCTCAGTAG
ATACCCCAATTGGTGGTGACGGTGATAAGGCATTGCTTGATATCATTCCTGACATCAACAACTCAGACCCTGAAGTGTCC
ACTCAAGATGACGATATTAAGCACTCTCTTATCGATTGGCTTGATGAACTCAATCCAAAACAGAAAGAAGTACTTGCTCG
TCGCTTTGGCTTGCTTGGCTATGAACCGTCTACGTTAGAAGAGGTAGGCCGTGAAATTAACCTAACTCGTGAACGCGTAC
GTCAGATCCAAGTTGAGGGTCTCCGTCGATTGCGTGAGATTCTATTGAAGCAAGGACTGAATATGGAGTCGCTGTTTAAC
TTCGACAGTGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.434	100	0.855