Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV29_RS11290 Genome accession   NZ_AP024861
Coordinates   2537558..2538958 (-) Length   466 a.a.
NCBI ID   WP_073605359.1    Uniprot ID   A0A1M6B263
Organism   Vibrio aerogenes strain LMG 19650     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532558..2543958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS11255 moaE 2532935..2533393 (-) 459 WP_073605314.1 molybdopterin synthase catalytic subunit MoaE -
  OCV29_RS11260 moaD 2533395..2533640 (-) 246 WP_073605313.1 molybdopterin synthase sulfur carrier subunit -
  OCV29_RS11265 moaC 2533637..2534116 (-) 480 WP_073605312.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV29_RS11270 moaB 2534121..2534633 (-) 513 WP_073605311.1 molybdenum cofactor biosynthesis protein B -
  OCV29_RS11275 moaA 2534737..2535723 (-) 987 WP_073605310.1 GTP 3',8-cyclase MoaA -
  OCV29_RS11280 yvcK 2536169..2537068 (+) 900 WP_073605361.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCV29_RS11285 luxU 2537196..2537552 (-) 357 WP_175561598.1 quorum-sensing phosphorelay protein LuxU -
  OCV29_RS11290 luxO 2537558..2538958 (-) 1401 WP_073605359.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV29_RS11295 uvrB 2539314..2541344 (-) 2031 WP_073605358.1 excinuclease ABC subunit UvrB -
  OCV29_RS11300 - 2541610..2542725 (+) 1116 WP_073605357.1 hypothetical protein -
  OCV29_RS11305 - 2542795..2543928 (-) 1134 WP_073605309.1 ATP-binding protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52335.08 Da        Isoelectric Point: 5.9022

>NTDB_id=88875 OCV29_RS11290 WP_073605359.1 2537558..2538958(-) (luxO) [Vibrio aerogenes strain LMG 19650]
MQSVKPTQKSRYLLMVEDTASVAVLYRSYLMPLDDIDITIVGTGKEALDSLQKREPDLILLDLRLPDMTGMDVLREVKVI
YPDVPVIFMTAHGSIETAVEAMRHGAQDFLIKPCEANRLRVTVNNAIRKASKIKATPDATSQNYQGFIGSSQMMQDVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RENDVIEIAYSLLGYMSKEEGKDFVRLSSEVTERFIHYEWPGNVRQLQNVLRNVVVLNAGREITLNMLPPPLNKPKETHL
RLIHPQEEDNKLSVQDIYPLWMTEKMAIERAIEACEGNIPKAAGHLEVSPSTIYRKLQSWNAEEKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=88875 OCV29_RS11290 WP_073605359.1 2537558..2538958(-) (luxO) [Vibrio aerogenes strain LMG 19650]
ATGCAATCAGTAAAACCGACACAAAAAAGCAGATATCTGCTGATGGTTGAAGATACGGCATCTGTTGCTGTACTTTACCG
TTCTTATCTGATGCCGCTGGATGATATCGACATCACCATCGTGGGCACAGGGAAAGAAGCTCTGGATAGTTTGCAAAAAC
GGGAGCCGGATTTAATTCTGCTGGATCTCCGTTTACCGGATATGACCGGAATGGATGTTTTGCGAGAAGTGAAAGTTATC
TATCCGGACGTACCGGTGATTTTCATGACGGCGCATGGTTCAATTGAAACAGCCGTGGAGGCGATGCGTCATGGTGCGCA
GGACTTTTTGATTAAGCCATGTGAAGCGAACCGGCTTCGTGTCACGGTCAATAATGCGATTCGCAAAGCCAGCAAAATTA
AAGCAACGCCTGATGCGACAAGCCAAAATTATCAGGGGTTCATCGGCAGCAGCCAGATGATGCAGGATGTTTACCGGACT
ATCGATTCAGCAGCATCCAGTAAAGCCAGTATTTTTATTACCGGCGAAAGCGGCACCGGTAAAGAGGTGTGCGCTGAAGC
GATTCATGCTGCCAGTAAACGGGGTGATAAACCTTTTATCGCGATTAACTGTGCAGCAATCCCGAAAGATTTAATTGAGA
GTGAACTGTTTGGTCATGTGAAAGGTGCGTTTACCGGCGCAGCAACCGATCGGCAGGGTGCCGCTGAGCTTGCCGATGGC
GGCACGCTGTTTCTGGACGAACTCTGTGAAATGGATCTTGACCTGCAAACAAAACTGTTACGGTTTATTCAGACCGGTAC
TTTCCAGAAAGTCGGCTCTTCACGTATGAAAAGCGTGGATGTCCGGTTTGTCTGCGCCACCAACCGTGACCCGTGGAAAG
AAGTGCAGGAAGGCCGGTTCCGGGAAGATTTATACTACCGGTTATATGTGATTCCGCTACATCTGCCACCACTACGTGAG
CGGGAAAATGATGTGATTGAAATTGCTTACTCACTTCTGGGCTATATGTCCAAGGAAGAAGGAAAGGATTTCGTCCGGTT
GTCATCAGAAGTGACAGAACGGTTTATCCATTATGAATGGCCGGGCAATGTCCGCCAGTTACAGAATGTTTTGCGTAATG
TCGTCGTGCTCAATGCCGGCCGGGAAATTACGCTGAATATGTTGCCCCCGCCACTGAACAAACCAAAAGAAACACATTTG
CGCTTAATTCATCCGCAGGAAGAAGACAACAAACTGTCGGTACAGGATATTTATCCGTTATGGATGACAGAGAAAATGGC
GATAGAAAGGGCGATTGAAGCCTGTGAAGGCAATATTCCCAAAGCGGCTGGCCATCTTGAAGTCAGTCCTTCAACAATTT
ACCGGAAACTTCAGTCCTGGAATGCAGAAGAGAAAGCTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-123)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M6B263

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

84.667

96.567

0.818

Multiple sequence alignment